Vibrio parahaemolyticus BB22OP: VPBB_0477
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Entry
VPBB_0477 CDS
T02409
Name
(GenBank) Uracil-DNA glycosylase, family 1
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VPBB_0477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_0477
Enzymes [BR:
vpb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
VPBB_0477
DNA repair and recombination proteins [BR:
vpb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VPBB_0477
Prokaryotic type
VPBB_0477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AGB08994
LinkDB
All DBs
Position
1:511609..512289
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AA seq
226 aa
AA seq
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MNQSPTWHDVIGEEKKQSYFVDTLNFVEAERAAGKAIYPPAKDVFNAFRFTEFNDVKVVI
LGQDPYHGPNQAHGLCFSVLPGIKTPPSLVNMYKELAQDIEGFQIPQHGFLQSWAEQGVL
LLNTVLTVEQGKAHSHSKTGWETFTDRVIEAINQHQHGVVFLLWGSHAQKKGRFIDRSKH
HVLAAPHPSPLSAHRGFLGCKHFSQANQLLASQGKEPINWHLPLTV
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagtcacccacttggcacgatgtgatcggcgaagagaaaaagcagagctacttt
gtagacacgttgaattttgttgaagcagaacgagcagcaggcaaagcgatttacccgcca
gcaaaagatgtttttaacgcatttcgtttcacggagtttaacgatgtgaaagtggtgatc
ttaggacaagacccataccacggtccaaatcaggcgcatggtttgtgcttctctgtgctt
cctggaatcaaaacgccaccgtcgctcgtgaacatgtataaagaattggctcaagatatc
gaaggattccagatccctcagcacggattcttgcaaagctgggcagagcaaggcgtattg
ttgctcaatacggttttgacggttgagcaaggcaaagcgcactcacactctaaaacaggg
tgggaaacattcacagaccgagtgattgaagcgataaaccagcatcagcatggggtcgtg
ttccttttgtgggggtctcacgctcagaagaaaggacgtttcatcgaccgctcgaagcac
catgtattagccgcgccgcatccatcgccattgtctgctcatcgagggttcttgggctgt
aagcatttctcccaagcaaaccaattacttgcttcgcaaggaaaagagccaatcaactgg
catttaccgttaacggtataa
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