Vibrio parahaemolyticus BB22OP: VPBB_0954
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Entry
VPBB_0954 CDS
T02409
Name
(GenBank) Exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VPBB_0954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_0954
Enzymes [BR:
vpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
VPBB_0954
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
VPBB_0954
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
YozE_SAM_like
Motif
Other DBs
NCBI-ProteinID:
AGB09456
LinkDB
All DBs
Position
1:complement(1053925..1054731)
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AA seq
268 aa
AA seq
DB search
MKVISFNINGLRARLHQLQALIDKHQPDVIGLQEIKVHDEAFPIEDVEAMGYKVYFHGQK
AHYGVAMLCKQEPIRVQKGFPTDNEEHQKRMIMATFENENGEKVTVLNGYFPQGDNINHE
TKFPYKRQFYKDLMTYLNDHHSNDEQLIVMGDINISPIDSDIGIGEPNRKRWLKTGKCSF
QPEEREWLKTLLDWGFEDTFRKLYPEVNDRFSWFDYRSRGFDDNRGLRIDVILATPSLAQ
KCIESGIDYELRGIEKPSDHAPIWSTFK
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtaatcagctttaacatcaatggactacgtgctcgactgcaccaactccaagcg
ctaatcgataaacaccagcctgacgttattggtcttcaagagattaaagtgcatgatgaa
gcgttcccgattgaagatgtcgaagccatgggttacaaagtgtattttcatggccagaag
gcgcattacggcgtagcgatgctttgtaagcaagagcccatccgcgtacaaaaaggtttt
ccaacggataacgaagaacaccaaaagcgcatgatcatggcgacgtttgaaaacgaaaat
ggtgaaaaagtaacggtgcttaatggctacttccctcaaggggacaacattaaccacgaa
acgaaattcccatacaagcgccagttctacaaagatctaatgacgtatctaaacgatcat
cacagcaacgatgaacagttgattgttatgggtgatatcaacatcagccctatcgattca
gatatcggtatcggagaaccgaaccgtaagcgttggttgaaaacgggtaaatgctctttc
caaccagaagaacgtgaatggctgaaaacattgttagattggggctttgaagatactttc
cgtaagctctacccagaagtgaacgatcgcttctcgtggtttgactaccgatctcgcggc
tttgatgacaaccgaggcctacgaattgatgtgattttggcgactccttctctcgcgcaa
aaatgtattgagtcgggtatcgattatgaattacgcggtattgaaaagccttcagaccac
gcgccaatctggtcgacattcaagtaa
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