Vibrio parahaemolyticus BB22OP: VPBB_1256
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Entry
VPBB_1256 CDS
T02409
Name
(GenBank) ABC transporter, periplasmic spermidine putrescine-binding protein PotD
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
VPBB_1256
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpb02000
]
VPBB_1256
Transporters [BR:
vpb02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
VPBB_1256
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Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_1
SBP_bac_6
Beta-prop_EIPR1
Motif
Other DBs
NCBI-ProteinID:
AGB09744
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Position
1:1393311..1394384
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AA seq
357 aa
AA seq
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MSRMTKTPLVMLISGMLLGTSAYAEDKLTVVSWGGVFTKSQVEAYHKPFIQKTGVEIVSE
DFSGGLAEIKAQVEANNVRWDLVSLDKPDIVRGCTEGLLEPVNPSILPPGADGTPAKEDF
IDGAIHECAINTIVVSTVLAVNEDAFKGKTAPTKLTDLFDLTNFPGRRALQKQPQGNLEW
ALLADGVKPDEVYRLLETEEGRARAFAKLDTIKPQVLWWTTGAQPPQMLADKEVVIASAF
NGRIHNARKDEGQPFRIIWDHQMGYMNGWAIPKGSANTKLALDFIAFSSGTKPLADQAKY
VAYGPTRKSSSAEVSPEILANLPTAPQNFKTAFLINDEWWSDYADELNEEFNTWLLN
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgaatgacgaaaacaccactggtgatgttgatttcaggaatgctgttgggtacc
tcggcatacgctgaagataaactaacggtcgtctcatggggtggcgtgttcaccaaaagc
caagtagaggcttaccacaaaccattcatccaaaagactggtgttgagatcgtatcggag
gatttcagtggcggtttggcggagattaaagcgcaagtagaagcaaacaacgtgcgttgg
gatttggtctcgctggataaaccagacattgttcgaggctgcacggaagggcttttggaa
cctgtcaacccgagtattctgcctcccggcgctgacgggacaccagcaaaagaggatttc
atcgatggggcgatccacgagtgtgcgattaacaccatcgtcgtatcgaccgtcttagcg
gtgaacgaggatgctttcaaaggcaaaacggcaccaaccaagttgacggacctttttgac
ttaacaaactttcccggtcgacgagcgctacaaaagcaacctcaaggtaaccttgaatgg
gcattattggccgatggcgttaaacccgacgaagtttaccgcctactagaaactgaagag
gggcgagcacgcgcctttgccaaactcgacaccatcaaaccgcaagtgctttggtggacg
acaggtgcgcagccaccacaaatgttggcagataaagaagtggtaatcgcgtctgctttc
aatggccggatacacaacgcgcgtaaagatgaaggccaaccatttcgcatcatttgggat
caccaaatgggttacatgaacggctgggctattcctaaaggaagcgcgaataccaaactt
gccctcgatttcattgctttttcttcgggtactaagcctttggcagatcaagctaaatac
gtcgcgtatggcccgactcgtaagtcttcttccgcagaagtaagcccagagattctggcg
aacctgccgaccgcgcctcagaactttaaaacggcgtttttgattaacgacgaatggtgg
tctgattatgccgatgagttgaatgaagagttcaatacttggctgcttaattag
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