Vibrio parahaemolyticus BB22OP: VPBB_1937
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Entry
VPBB_1937 CDS
T02409
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VPBB_1937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_1937
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VPBB_1937
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VPBB_1937
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AGB10408
LinkDB
All DBs
Position
1:complement(2161464..2163494)
Genome browser
AA seq
676 aa
AA seq
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MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPA
ILLAPNKTLAAQLYGEMKSFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIE
QMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLHLRRGDVIDQRDMLRRLAELQ
YSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNE
LGFCSGIENYSRYLSGRSEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKE
TLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNYELEKSAGEIADQVVRPTGLL
DPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTI
GRAARNIEGKAILYADSITKSMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMEL
GDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEISRLEAAMYQHAQDLEFELAAE
KRDEIEKLRAQFIANS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagtttatgaactggtctctgagtatcagccatcaggtgaccagccaaccgcg
attaagcaattattagaaggcttagatgcggggttggcgcatcagacgcttttaggtgta
acgggttctggtaaaacgttcacgctagcgaatgtgattgctcaagcacagcgtcctgca
attttactggcgccaaataaaaccctcgcggctcagttgtatggggaaatgaaatcgttc
tttcctaacaatgcggtcgagtattttgtgtcttactacgactactaccaaccagaagcg
tacgtgcctacaactgacacctttattgaaaaagatgcgtcagtgaacgctcacattgag
caaatgcgtttgtctgccaccaaagctttactcgaacgaaaagatgccatcatcgtcgct
tcggtctcggccatctatggtttgggtgatcccgagtcgtatttacagatgatgctgcac
ttacgccgtggtgacgtgatcgatcagcgtgacatgcttcgtcgcctagcggaactccaa
tactcgcgtaatgatgtcgcttttgaacgcggtcagttccgtgttcgcggcgaagtgatt
gacatattcccagccgagtctgaccaagatgctgtgcgcgttgaaatgtttgatgatgaa
gtggattgcatcagtgtgtttgacccattgacgggtgtcgtgaaacaaagagatttgccg
cgttacacgatttacccgaaaacgcactacgtgacgccccgcgaccgtattctcgaagcg
atagaaagcatcaaagttgagctcgaagtacgcaagaaacaattactagagaataacaag
ctaatagaagagcagcgcattagccagcgtacacagtttgatatcgagatgatgaatgag
ctcggtttctgctctggtatcgaaaactactcacgttatctcagtggtcgttctgagggc
gagccgcctccaaccttgttcgattacttgcctcatgatggtttgcttatcatcgatgag
tcccacgtgactgtaccgcagattggtgcgatgtataaaggtgaccgttcacgtaaagaa
actctggttgagtttggtttccgcttaccatcggcgttggacaaccgtcctctaaaattt
gaagaatttgaatctcttgctccgcaaactattttcgtctcggcaacgccgggcaattat
gagctagagaaatcggcaggtgaaattgcggatcaagtcgtgcgtcctaccggcttgctg
gatccaatactcgaagttcgaccagtcgcgactcaggtcgatgatctattgtctgaaatt
cgtattcgtgccgccaaagaggaacgtgttcttgttacgactctgaccaaacgaatggcg
gaagatttaacggaatatctgcatgaacatgatgttcgtgttcgatatcttcactccgac
atcgacacggtagagcgcgtcgagatcattcgagatttgcgcttaggtgagttcgatgtc
ttagtgggtatcaacttgcttcgagaaggtttggatatgccggaagtctcgctggtggca
attttggatgccgacaaagaaggtttcttgcgttcagaacgttcactcattcagacgata
ggtcgtgctgcacgaaacattgagggtaaagcgattctctatgcggatagcattacaaaa
tcgatgaaaaaagcgatggatgaaaccaatcgtcgtcgtgagaagcagcaagcgtacaac
gagaaaatgggcattacgccgcaagcgttaaaacgtaatatcaaggatattatggaattg
ggcgacattactaagtccaaacgtcaacgcaatactaagcaagtgccactgtctaaagtg
gctgaaccatctcaaacttacgaagtgatgtctccacaacaattggagaaggaaatcagt
cgactagaagcggcgatgtaccaacatgctcaggatctggaatttgagcttgcggctgag
aagcgtgatgaaatagaaaaactgcgtgcgcaattcatcgcgaatagctag
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