Vibrio parahaemolyticus BB22OP: VPBB_1998
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Entry
VPBB_1998 CDS
T02409
Name
(GenBank) DNA polymerase III subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03030
DNA replication
vpb03430
Mismatch repair
vpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VPBB_1998
03430 Mismatch repair
VPBB_1998
03440 Homologous recombination
VPBB_1998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpb03032
]
VPBB_1998
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_1998
Enzymes [BR:
vpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VPBB_1998
DNA replication proteins [BR:
vpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VPBB_1998
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VPBB_1998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_tau_5
DNA_pol3_delta2
DNA_pol3_gamma3
DNAX_ATPase_lid
DNA_pol3_tau_4
AAA
RuvB_N
AAA_22
AAA_5
AAA_16
ResIII
AAA_14
AAA_2
AAA_30
PIF1
AAA_18
AAA_assoc_2
mono-CXXC
Motif
Other DBs
NCBI-ProteinID:
AGB10467
LinkDB
All DBs
Position
1:complement(2225659..2227794)
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AA seq
711 aa
AA seq
DB search
MSYLALARKWRPNKFDQVVGQKHVLTALENALAQNRLHHAYLFSGTRGVGKTSIGRLFAK
GLNCETGITATPCGECATCREIDEGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRF
KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISV
DDIHQQLDYILGQEQVSAESKALGMISHAADGSMRDALSLTDQAIALGNGAVQTDIVSHM
LGTIDTDQAIHLLESISSKQPQQAMDKIHQLATNGVEWDGLLQQIATQLHRIAMYQALPA
SLDRAQPDAEKIELLSKALSPQDVQLYYQIALKGREDLTLSPNGRVGMEMIVLRMLAFRP
SANNGANIVTAGSQPQLSQMPNASLTNSAPAQQAPVAQQQSRPNPVQAQQSVSQPVRPSV
NQPASMNEEPQYQPDYQTGGYDMSPPQYDMAPPMSENPAPEAQPQQESTPAPSRMGAAGL
RHQLRSQRKQGLQQNITQNGGTKKPKAASAKPESVIDRVAQLHGNSAQVSPNSTPKPTEP
EVEEAYRWRPSKPVETKVNTKLTPTQLKQALEHEKTPEMAQKLIDESLEQNEWAKMISLM
NLPKLVEQLALNSDYSKEGSTVSLQLRSSQAHLNTDRAQSELLNALNTVLGEECHLSIEV
GESGETPLELRDRLYQEKLQQALNSLENDPNVDFIERRFAAELDKDSVRPI
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgagttatttagctttagcgcgaaaatggcgtcctaataagtttgaccaagtcgtaggg
caaaaacatgttctaacggcactggaaaacgcattggcgcaaaaccgtttacatcatgct
tacctattcagtgggacgcgtggtgtgggtaaaaccagtatcggccgtttgtttgccaaa
gggttgaactgtgagactggtatcaccgccacaccatgtggtgaatgtgctacctgccga
gagattgatgaaggtcgctttgttgacttgcttgagattgacgcggcatcacgtactaaa
gttgaagatactcgcgaactgctagacaacgttcaatacaaacccgctcgtggacgtttt
aaagtgtacctcatcgatgaggtgcacatgctgtcgcgtcactctttcaatgcgttattg
aaaaccttggaagagccgccagagtatgtgaagtttttgctcgcaacaaccgatccacag
aagctgccagttaccattttatctcgttgtctgcagttccatctcaagccaatcagtgtt
gatgatattcatcagcaacttgactacattttggggcaagagcaggtttcagcagagtcc
aaagcgcttggcatgatctctcatgccgctgatggcagtatgcgtgatgcgctgagtttg
accgaccaagcgattgctttaggcaatggtgcggtgcaaaccgacatcgttagccacatg
ctgggaaccatcgatacggatcaagcgattcacttgcttgagtcgatcagcagtaaacag
cctcaacaagccatggataaaatccaccaattggcgacgaatggtgttgagtgggacggt
ttattgcaacaaatcgcgacgcagttacaccgcatcgctatgtatcaagcactgcctgcg
tcactagaccgagcacagcctgatgcagaaaaaatcgaattattaagtaaagcgctcagc
ccacaagatgtgcagctttactatcaaattgcgctaaaaggtcgtgaagatctgacgctg
tctccaaatggccgtgttggtatggagatgatcgtcttacgtatgttggcttttcgtcca
tcagcgaataacggtgcaaatatcgttaccgcaggatctcaacctcagttgagtcagatg
ccaaatgcgagtctaacgaattcagcgccagcacagcaggctccggtagcacaacagcag
tcgcgcccaaatccagtgcaagcacaacaatctgtttcgcagcccgttcgtccgtcagtg
aatcagcctgcgtcaatgaatgaagagccacaatatcagccagattatcagactggtggt
tatgatatgtcgcctcctcagtacgacatggctccgccaatgagcgaaaacccagcgcca
gaggctcaacctcagcaagaaagcacgcctgcgccatcaagaatgggagcagcaggctta
cgtcatcaattacgttcacagcgtaagcagggtttacagcaaaacataacgcaaaatggt
ggcacaaaaaagcctaaagcggcatctgcaaaaccagaatcggtcatcgaccgagtagcg
caattgcatggcaattccgcgcaggtgtcgccaaactcaacgccaaagcctactgaacca
gaagttgaagaagcgtatcgctggcgtccaagtaagcctgttgagacgaaagttaatacc
aagctgacacctacgcagctcaagcaagcgcttgagcatgaaaaaacaccagaaatggca
caaaagctgattgatgagtcacttgaacaaaacgagtgggcgaaaatgatcagtttgatg
aacctgcctaagctggtggaacaacttgcgctaaactctgactatagtaaagaaggctcg
accgtttctttacagttgagaagcagccaagcacacttaaatacagatagagctcaaagt
gagctgcttaacgcactaaacacggttttaggtgaagagtgtcacttgagtatcgaagta
ggagagagtggcgaaacaccacttgaactgagagacaggctctatcaagagaagttacaa
caagcgctgaacagcttggagaacgacccgaatgtcgactttatcgagcgtcgttttgct
gcagagcttgataaagatagtgtgcgccctatctaa
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