Vibrio parahaemolyticus BB22OP: VPBB_2009
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Entry
VPBB_2009 CDS
T02409
Name
(GenBank) tRNA pseudouridine synthase A
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpb03016
]
VPBB_2009
Enzymes [BR:
vpb01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
VPBB_2009
Transfer RNA biogenesis [BR:
vpb03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VPBB_2009
Prokaryotic type
VPBB_2009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-ProteinID:
AGB10478
LinkDB
All DBs
Position
1:complement(2236780..2237574)
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AA seq
264 aa
AA seq
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MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSIVANHPVEVQCAGRTDAGVHGTGQV
VHFDTNVNRKMVAWTMGANANMPSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHALRP
GILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHGDY
VVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYLVD
VDYPEEFELPCVPIGPLFLPDNLN
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgagaatcgcattaggtatcgaatacaacggtacaaattattttggttggcaacgccaa
agagaagtgaaaagtgttcaagaagaactagagaaagcgttgtccatcgttgcgaaccac
cctgtcgaagtgcagtgtgcaggtcgtactgatgcgggtgtacatggtacgggacaagtt
gttcactttgataccaacgttaatcgaaaaatggtggcttggactatgggcgcaaatgcg
aacatgccaagtgacatcgctgttcgctgggcaaaagaagttcctgatgacttccacgcg
cgattctcagcaacagcgcgtcgttaccgctacatcatttttaatcacgcattgcgccca
ggcattttgaactcgggtgtgagccattatcacggcgagctagatgaaaagaaaatgcat
gaagccgggcaatatttgttaggtgaaaatgacttttcatcattccgtgcagcgcattgt
cagtcgttgagtccgtgccgtaatttgatgcatttaaacgtcactcgtcatggtgattat
gttgttatcgacattaaagcgaacgcgttcgttcaccacatggttcgaaacatcacaggt
agcctgattaaagttggtcgtggtgaagaaaaaccagagtggatcaagtggttgcttgag
gcaaaagatcgcaaacttgcaggtgcaacagcgaaggctgaaggtttgtacttagtcgat
gtcgattatccagaagaatttgaattgccttgcgtgccgatcggtccgctgtttttgcca
gataatttgaactaa
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