Vibrio parahaemolyticus BB22OP: VPBB_2108
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Entry
VPBB_2108 CDS
T02409
Name
(GenBank) DNA polymerase III epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03030
DNA replication
vpb03430
Mismatch repair
vpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VPBB_2108
03430 Mismatch repair
VPBB_2108
03440 Homologous recombination
VPBB_2108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpb03032
]
VPBB_2108
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_2108
Enzymes [BR:
vpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VPBB_2108
DNA replication proteins [BR:
vpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VPBB_2108
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VPBB_2108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AGB10574
LinkDB
All DBs
Position
1:complement(2340241..2340963)
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AA seq
240 aa
AA seq
DB search
MNTSSNSEHNRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPD
REIQPEAIQVHGITDEFLVDKPEYASIHQEFLDFIKGAELVAHNAPFDTGFMDYEFEKLD
PTIGKTDDYCKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVY
LLMTGGQTSLEFNANKQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVNDCIWHQ
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgaataccagcagcaattctgaacataatcgcattgtcgttctcgataccgaaaccaca
ggtatgaaccaagaaggtggtccgcactacttaggtcaccgcatcatcgaaatcggtgcc
gtggagatcatcaaccgtaagctgactggtcgtcatttccatgtgtacattaaacccgat
cgtgaaattcaacctgaggcgatacaagtacacggtattaccgatgaattcttggtagat
aaaccggaatacgcgagtatccaccaagagtttcttgattttatcaaaggcgcagaactg
gttgcgcataacgcgcccttcgatactggcttcatggattatgagtttgaaaaactcgat
ccaacaattggtaaaaccgacgattactgcaaggtgacggatacgcttgccatggcgaag
aaaatcttcccgggcaagcgcaacaacctcgacgtattatgtgaacgttacggcattgat
aactcgcaccgtacactccacggggcattgctcgatgcggagattctagccgacgtttac
ctactgatgacaggtgggcaaacgagtctagaatttaacgccaacaaacaagaaggcggg
gtagaaaccattcgccgcattgaaggaagaaaagcactaaaggttttgcgtgcaactgcc
gatgaattagaagcgcaccagaaaagattagaactggtaaacgactgtatttggcaccaa
tag
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