Vibrio parahaemolyticus BB22OP: VPBB_2112
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Entry
VPBB_2112 CDS
T02409
Name
(GenBank) Membrane-bound lytic murein transglycosylase D precursor
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vpb01011
]
VPBB_2112
Enzymes [BR:
vpb01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
VPBB_2112
Peptidoglycan biosynthesis and degradation proteins [BR:
vpb01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
VPBB_2112
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
LysM3_NFP
T2SS-T3SS_pil_N
Motif
Other DBs
NCBI-ProteinID:
AGB10577
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Position
1:2343302..2344888
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AA seq
528 aa
AA seq
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MRLKYSWALVLLLSGCQLTQPNSSTTPTPETNKSEQTAKQNATKTKSKNKQSLAKDSAKD
TPKVLSPQEQEDVWQRIAMQLEMDIPNNKKVDYYRTWYLKHPNHLYTVSKRAAPFLYMIT
QRIEERGLPMELALLPVVESSFDAFAYSHGSAAGLWQFVPGTGKMMGLEQNYWYDGRRDV
AASTDAALDYLVQLNERFDGNWEHAIAAYNSGGGRVSSAIRKNKKLGKPVDFFSLDLPKE
TSSYVPKLLALADVVANQEKYGIDIPSIPNKPVLTLVDPKEQLDLAIAADYAGIGVKELQ
SYNPAYNQWSTAPEGPHQLLIPVEKKDAFLTQVESNRGKGMKVARYKVKSGDSLSMLAKK
YGTTSKVIRRANGLPNNNIRIGQYLLIPTSTKDDSKYALTAQNRLNKTQSQARGQLKLSH
VVQSGESLWSIARDNKVSHKSLAKWNGMGPKDTLRVGQKLVIWKKSDQGAVIRTVFYNVR
SGDTISGIASKFKVKSNDIVKWNSLHKQKYLKPGQKLKLYVDVTKVSV
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttgaagtatagctgggcgttggtgttgttattatctggctgtcaattgactcag
ccaaattcgtccaccactccaactccagaaaccaacaagtcagagcaaactgctaagcag
aatgccactaagactaaatctaaaaacaaacaatctttggcgaaagattctgctaaggat
acgccaaaagttctctcccctcaggaacaagaagatgtgtggcaacgtattgctatgcag
cttgaaatggacatcccaaacaacaagaaagtggattattaccgtacgtggtatttgaaa
cacccaaaccacctgtacacggtatctaaacgtgcagcgccatttctttacatgatcacg
caacgtatcgaagaacgtggattgccaatggagcttgctcttctaccggttgtggaaagc
tcatttgacgctttcgcctactcgcacggtagcgcagcaggtttgtggcagtttgtgcca
ggcacagggaaaatgatggggcttgaacaaaactactggtatgacgggcgtcgcgatgtc
gctgcctctaccgatgctgcattggattatcttgttcaattaaatgaacgttttgacgga
aactgggaacacgcaatcgcagcctacaatagtggcggcggtcgtgtatctagcgctatc
cgtaagaacaaaaaattgggtaaacctgtcgactttttctctttagatctgccaaaagag
accagtagctacgtgccaaaacttctcgctcttgcggacgtggtggcaaaccaagaaaag
tacggtatcgacattccatctatcccaaacaaaccagtgctgacgttagtcgatccgaaa
gaacaactggatctcgctatcgctgctgattacgcgggcatcggggtaaaagagctgcaa
agctacaaccctgcctacaaccaatggtccaccgcaccagaaggtcctcatcagcttctt
attcctgtggagaagaaggatgcgttcttaactcaagttgagagcaatcgcggtaaaggc
atgaaagtcgcgcgttacaaagtcaaatctggcgactcgttgagtatgttggcgaagaaa
tacggtacgacctcaaaagtgattcgtcgtgctaacggcctgccgaacaacaacattcgc
attggtcagtacttacttattccgacgtcaaccaaagacgactcaaagtacgcacttaca
gcgcaaaaccgtttgaacaaaacgcaatcgcaagctcgtggccaactgaaactgtcacac
gttgtgcaatcgggtgaaagtttgtggtctatcgctcgtgacaacaaggtttcacacaaa
tcgctagcaaaatggaacggcatgggaccaaaagataccctgcgcgtcggtcaaaagctg
gtgatttggaaaaaatcagaccaaggcgccgtgattcgtaccgtgttctacaacgttcgc
tctggcgacaccatcagtggcatcgcaagcaaattcaaggtgaagagcaacgacatcgta
aaatggaactcgctgcataagcagaagtacctaaaaccgggtcaaaaacttaagctgtac
gtagatgtaactaaggtaagtgtatga
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