Vibrio parahaemolyticus BB22OP: VPBB_2119
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Entry
VPBB_2119 CDS
T02409
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03030
DNA replication
vpb03430
Mismatch repair
vpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VPBB_2119
03430 Mismatch repair
VPBB_2119
03440 Homologous recombination
VPBB_2119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpb03032
]
VPBB_2119
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_2119
Enzymes [BR:
vpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VPBB_2119
DNA replication proteins [BR:
vpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VPBB_2119
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VPBB_2119
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AGB10583
LinkDB
All DBs
Position
1:complement(2349810..2353289)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGS
GVKPIIGADFKMQSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRTW
LAEMSEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFPDRFYLELIRTGRPDEET
YLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVMKSREGL
EERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRIESIPLEDPASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVPPWPEKVWLEGERETLGLY
LTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGLSVSIDANQINDQFFEQFSRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LIDDLKQLLGKSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcccaagttcgtccaccttcgtattcacagtgatttctcgatggtggatggt
atcaataaagttccaccgatagtcaagaaagtcgccgagcttggtatgcctgccatggct
ttgactgacttcaccaacttatgtggtttggtgaagttttatggcacagcgcatggctcc
ggcgttaaaccgatcatcggtgcagatttcaaaatgcaatctgatgaatttggtgaagaa
ctgacccagctgacagtacttgctgccgacaatgcaggttacaagaacctcacgttactg
atttccaaagcgtacttacgtggccacgttcagcaccaacctgtgattgataggacgtgg
ctggccgagatgtcagaaggcttaatcgttctctctggcgctaaaaatggcgatatcggc
aaagcgctgcttaaaggtaaccgtaaactggttgaaagctgtgtagagttttacaaacag
catttcccggaccgtttctatctagaattgattcgtacaggtcgtccggatgaagagacg
tacttgcattttgccatcgatctcgctgagcaacatgacttgcctgtggtcgcgacaaac
gaagtggttttcctaagtgcagaccttttcgatgcgcacgagattcgtgttgcgattcat
gatggttacacattagaagatccacgccgaccaaaaaattacagcccgcagcagtacctt
cgcactgaagaggaaatgtgtgagctgtttgctgatattccagaagcgctagaaaacagt
gttgagatcgccaagcgttgtaacgtgaccgttcgtttgggtgaatacttcttgccagcc
ttcccaacagaagggatggaagaaactgaattcttggtcatgaagtcgcgagaaggtttg
gaagagcgtctagagttcctattccctaatgaagaagagcgcaaaaagcgccgtccagaa
tacgacgagcgtttacaaatcgaactcgacgtaatcaaccaaatggggttccctggctac
ttcttgatcgtaatggagttcatccagtggtcgaaagacaacgcgattccagtcggtcct
ggtcgtggttcgggtgccggttctttggtggcctacgcgctgaaaatcaccgatcttgat
ccgcttgaatatgacttgctcttcgaacgtttcttgaacccagaacgtgtatccatgccc
gatttcgacgtcgacttttgtatggataagcgtgaccaagtgattgatcacgttgccgaa
atgtacggtcgcgatgccgtatctcagatcatcacattcggtacgatggcggcgaaagcg
gtaatccgtgacgttggtcgtgttcttggtcacccatttggtttcgttgaccgtatttcg
aaactggttccgccagatccaggtatgacgctagaaaaagcgtttaaagctgagcctgct
ctgcctgagctttatgaggccgatgaggaggttaaagaactcatcgatatgtgccgccta
ttagaaggttgtacacgtaacgccggtaagcacgcgggtggtgttgtaatttcaccaacc
acgattacagactttgcgccaatttatgcggatgcggaagggcattttcccgtaactcag
tttgataagaacgacgtagaaactgctggtctggttaagtttgacttcttgggtctacgt
actctaaccattatcgactgggcattagggttgattaacccgcgcttggagaaggaaggt
aaacctccagttcgtatcgagtcgatacctttggaagatccggcttcgtttcgtttactc
caaaactcagagaccactgcggtattccagcttgaatcgcgtggtatgaaagagctgatc
aaacgacttcagcctgactgttttgaagacatcatcgcattggtggccttgttccgtccg
ggtccgttgcaatcgggcatggtagataactttatcgaccgtaaacatggccgagaagcg
atctcttaccccgatgaaaagtggcaacacgagtcactaaaagaaatcctcgatccgacg
tacggcatcattctgtatcaagaacaggtaatgcagattgcgcaggttttgtctggctac
acccttggtggtgcggacatgctgcgtcgtgcgatgggtaagaaaaagccggaagaaatg
gccaagcagcgtgcaaccttcgaagaaggggcagtgaagaacggtgttgatggcgagttg
gcgatgaaaatcttcgacttggtagaaaagttcgcaggttacggttttaacaaatcgcac
tcagcggcttacgcgctggtgtcttaccaaacgttgtggcttaaaacgcactatccagct
gaattcatggcggcggtaatgactgccgatatggataacaccgaaaaagtagttggtctg
gtggacgaatgtttccgcatgaaactcaccgtgttgccgccagacatcaactccggttta
taccgtttcaacgttgatgaaaacggtgcgattgtttacggtatcggcgcaatcaaaggt
gtgggtgaaggccctatcgatgcgatactagaagcgcgaaacaaaggtggtcactttaaa
gacctatttgatttctgtgctcgtatcgatctcaaacgtgttaacaagcgcgtcatcgaa
aagctgatttatgcaggtgcacttgaccgacttggccctcatcgagcggcgatgatggcg
tcactgaacgatgccgttaaagcggccagccaacatcaccaagcagaggcctttggccaa
ggcgatatgtttggtgtgttgaccgatgcaccagaagaagttgagaataaatacacgcaa
gtgccaccatggccagaaaaggtttggctagaaggggagcgcgaaactctcggtttatat
ttgaccgggcaccccattaacgcgtatttaaaggaactaaacaaatacaccagttgtcga
ctaaaagacgcgaccccaacacgtcgcgatcaatcggtaacggtagcaggtttagtgatt
gctgcgcgagtgatgacaaccaagcgaggtactcgcattggtatcatgacgttggacgac
cgaagtggtcgaatggaagtaatgctgttctccgatgcacttgatcggtatgctgaactt
ctcgaaaaagacagaattttggtggtttcgggacaggtcagctttgatgacttcaacggt
ggccttaaaatgtcggcgcgtgaagttatggatctcggcagcgcgcgcgaaaaatacgca
cgtggtctgtcggtatcaattgatgctaaccagatcaatgatcaattctttgagcagttt
agtcgtattttagaaccgcacaaagccggaaccgtacccgtcaatgtatactaccagcgt
gccgacgccagagcgcggttaacattgggcaccgaatggcgagtaacgccaagtgataca
ttaatagacgatttaaaacagttgcttggcaaaagccaggtagaactcgaatttaactaa
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