Vibrio parahaemolyticus BB22OP: VPBB_2156
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Entry
VPBB_2156 CDS
T02409
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VPBB_2156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpb03019
]
VPBB_2156
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_2156
Enzymes [BR:
vpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VPBB_2156
Messenger RNA biogenesis [BR:
vpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VPBB_2156
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VPBB_2156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Enoyl_reductase
DDE_3
Motif
Other DBs
NCBI-ProteinID:
AGB10619
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All DBs
Position
1:2389952..2391877
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AA seq
641 aa
AA seq
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MQSTQLLQTLQSVFGFDSLRQGQQPVIESVMNGYSAAAIFPTGSGKSLCYQLPATMLPNL
TLVISPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQRVMVGVKNGEIKILMISVERLK
NERFREFIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNIPQTLLLTATATPA
VIEDMKNKFDIASDHITVTGFYRSNLDISVIPCEESEKQTQLNTIVAAAPRLPTIVYVTQ
QQTAEQVAKSLIHIGVNAHAYHAGMKSEVREQIQQQFMAGQIDCIVATIAFGMGVDKSDI
RRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFVFGDTPERSSISYV
LGQIKEHQPQWEVVPLRLSRESNIRQLPLKTLLVYLELAKVIEAKFSYFAEYRFKFLQDQ
QFIVNQFQGERREFVEAIFTCSTKAKVWCQVDLDALWMHYHSERSRVVAALDYFHQNGWV
ELESKQLTDVYSVLPETQNIEDITQHLYELFQSKERKDIDRIHAMLGLFQSSDCLSHQLA
SYFADHNAPAHCGHCSVCRGQRAVFPPRIYDQPEPAVASAWIAEFVQLSPSAISNEAIAR
FLCGISTPLISQLKASKLSGYGALANVSFEQVLQLVESVRE
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtacccagttactacaaacgcttcaatccgtgtttggttttgactcattacgc
caaggccaacaaccagttattgaatcggtcatgaatggttactctgcagcagcaatattt
ccaacgggctcgggcaaatctctttgttatcaactccccgccaccatgctgccaaacctc
actttagtgatctcgccattactggcactaatgaaagatcagctgagctttttgcaaagc
aaagggatcgccgccgcttctattgatagcagccaaagcagagaagaagcgcaacgcgta
atggttggagtcaaaaacggtgaaatcaaaattctgatgatttctgtcgaacgcctcaaa
aacgagcgctttcgcgagttcattcgtcaggtgccaatctctttgatggtagtcgatgaa
gcgcactgtatctctgagtggggacataacttccgtccggattacctcaagttgccgcaa
tatcagcgagaactgaatattccccaaaccttgttgctgaccgccacagcaacgcccgcc
gttattgaggacatgaaaaataagttcgatattgcgagtgaccacattactgtaactggc
ttttaccgttcgaacctcgatatttcagtcatcccttgcgaagagtccgaaaagcaaacg
caactcaacacgattgtcgccgcagcccctagactgccaaccatcgtttacgtaacgcaa
cagcaaactgcagagcaagtggctaagtcattgatccacattggcgttaacgctcatgcg
tatcatgcaggaatgaaaagtgaagttcgtgagcaaatacaacagcaatttatggcgggc
caaattgactgcattgtggccacgattgcctttgggatgggtgtcgacaaatccgatatt
cgccgagtgatccactttgatctgcctaaatccattgaaaactatgcccaggaaataggt
cgagcaggacgagacggacaacgctctgaatgcattctgcttggcaatacttctgggcta
actgtattagaaaactttgtgtttggcgacacgcctgagcgctcttcgattagttatgta
ttgggtcaaatcaaagagcaccaacctcagtgggaagtcgtgccactacgtttgtctcgc
gagagcaatatccgccagttaccactcaagacgctgttggtgtatttagagcttgcaaaa
gtgatcgaagctaagtttagctactttgccgaatatcgattcaaattcctacaagatcag
caatttatcgttaaccaattccaaggagaacgacgcgagtttgtagaagccattttcact
tgttcaaccaaagcgaaagtatggtgccaagtcgatctcgatgctctttggatgcattat
cactcggaacgtagccgcgttgtcgctgctctggattactttcatcagaatggttgggtt
gaactagaaagcaagcagctaaccgatgtgtattccgtcttgcccgaaacacagaatatc
gaagacatcacgcagcatctgtacgagctattccagtctaaagagcgcaaagacatcgac
cgaattcacgccatgctggggttattccaatcgtcagattgtttaagtcatcaattagcc
agttactttgccgaccacaatgccccggctcactgcggtcattgttctgtgtgtcgagga
cagagagcggtgttcccacctcggatttacgatcaacctgaaccagcagtcgcctccgct
tggattgcagagtttgtccaactttccccttctgcaatcagtaacgaagccatagcccga
ttcttatgtggcatcagcacaccgttgatcagccaacttaaagcctcaaagctatctggg
tatggtgcattggctaatgtgtccttcgaacaggtactacaattggttgaaagtgtgcgg
gaatag
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