Vibrio parahaemolyticus BB22OP: VPBB_2203
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Entry
VPBB_2203 CDS
T02409
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VPBB_2203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_2203
Enzymes [BR:
vpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VPBB_2203
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VPBB_2203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
SLFN-g3_helicase
ResIII
AAA_11
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AGB10665
LinkDB
All DBs
Position
1:complement(2447505..2451188)
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AA seq
1227 aa
AA seq
DB search
MDQMSGAECPLHTLDRTEQPQPTPLEPMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLG
HGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRARIHDARIAFARGQSSDPVIQPLLN
EFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKAQ
VVADYWRRNFYPLPFTLAGEIRQLWGSPSALLSDISNYLTGAPLSLSVPAMKGSLADLHI
ENLKKIDELKAQWRESQDDFFTLISDSDINKRSYTKKSLPTWLEAVNAWAATETSGYDYP
DKLEKFAQNVLLEKTPKGSAPQHAVFEAIETFLANPISLKAPLLAHAIEHCRVMLANAKN
QKQWLSFDDLLTQLSASIDTDESELLAARIRTLYPVAMIDEFQDTDPLQYSIFSRIYLNN
PECGLFMIGDPKQAIYGFRGADIFTYIKARNQVSAHYTLGTNWRSSADMVQAVNQVFALP
DSPFIYDSDIPFLPVKYSPNAEKRIWTMGGQKQPALTYWLQEADDKPLPKGEYLTRMAEA
TASQIQTILTQAQQGQACLVNGEKQKAVQAGDIAVLVRTGSEGRMIKQALADQGIASVYL
SNRDSVFTSSVAQDLQRLLQAVLTPENDRALRASLASELFALDAASLDALNNDEVVWENA
VNEFKEYRKLWVQRGVLPMLRAVISKRHIAERLLEEGASSQGENGERVLTDLMHIGELLQ
QASNELDSDHGLLRWLAQSISDAENGLGGSDDQIQRLESERNLVQIVTIHKSKGLEYDLV
FLPFVFSYREASEAKYYDAASDRTVLDITGNDASMKQADKERLAEDLRLIYVALTRAVYA
CFIGASPLRNGRSTKEPTGVHRSAIGYLIQNGQEGGINDLHQGLTKQQDELDCVVVADPP
QQLEDNYVAPQEEIHDLSAKELQNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDID
SSEEQDEADLVEPERSIFTFPRGARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQ
LDEEWLPILQQLIDTVLATPLDGKSLLLNQKAPSQRLVEMEFLLPIEVLSAPALNRVIQR
HDPLSAKAGDLGFQTVQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVTHYHGEALKSAM
ADHRYDLQYQIYALALHRFLRSRLANYQYDHHFGGVYYLFLRGMDGQSDHGIFAAKPTLE
FLQEMDRLIDGQALETRSTQAGQMELL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaatgtcaggtgcagagtgccctctacatacgttagaccgcacagagcaacct
caaccaacgccactagaaccgatgacgtttcctctgcacggtgcgaggttaatcgaggca
tcagcaggtacaggtaaaaccttcactattgcaggtttatatctgcgccttttgcttggt
cacggcagcgcggaaactcgacatcgcgtaccgcttacggtcgaccaaattctggtcgta
acctttaccgaagcggcaactgcggaattgcgcgatcgtatcagggcaagaatccatgat
gcgcgaatcgcttttgcgcgtggacagagttccgatccggtgatccaacctttgcttaat
gagtttgacgatcacaagcaagccgcagaaattttattgcaggcagagcgtcagatggat
gaggcggcggtctacaccattcacggtttttgccaacgtatgctaacgcaaaatgcgttt
gaatctggcagccgatttaataacgagtttgtgaccgatgaaagccacctaaaagcgcaa
gttgtagccgattactggcgccgcaatttctacccattgccatttactttggcgggagaa
atccgccagctatggggctctccatctgcgttgttgtctgacatcagcaattacttaacc
ggtgcgccgttaagcctttctgttcctgcaatgaaaggcagtttggctgatcttcatatt
gaaaatttgaaaaaaattgatgaattaaaagcacagtggcgagaaagccaagatgacttc
ttcacgctgatttcagattcagatattaacaaacgcagctacaccaaaaagtctctgccg
acgtggttggaggcggtaaacgcttgggcagcaacggaaacctcaggttacgattatcca
gataagctggagaaattcgcgcaaaacgtcttgttggaaaaaacaccgaaaggcagtgcg
ccgcagcatgcggtatttgaagccattgaaacatttcttgccaatccaatcagcttaaaa
gcgccactgcttgcgcatgcgattgagcattgtcgtgtgatgctggccaacgcgaaaaat
caaaaacagtggctctctttcgatgatttgctgacgcaactttctgcttctatcgatacg
gacgaaagcgagcttttagcggcgcgtattcgtactttgtatcctgtcgcaatgattgac
gagttccaagataccgacccgcttcaatacagtattttcagccgtatttatctgaacaac
ccggaatgtggtttgtttatgatcggggaccccaagcaggcgatttatggctttcgtggc
gcagacattttcacttatatcaaagcgcgtaaccaagtaagtgcccactacacgttagga
accaactggcgttctagcgcagatatggtgcaggcggtaaaccaagtatttgctttgcca
gacagtccatttatctatgattcggatattcccttcttacccgttaagtacagtcctaat
gccgaaaaacgtatttggactatgggtggccaaaagcaaccggcgctgacttattggttg
caagaagcggacgataaaccgctaccaaaaggcgagtatttgactcgaatggcagaggcg
accgcaagccaaatccaaactattttgacgcaggctcaacaggggcaagcgtgtctggtg
aatggcgaaaaacagaaagcggttcaagcgggcgatatcgcggtgttggttcgaacaggt
agtgaaggtcgaatgatcaaacaagcgttggctgatcaaggcattgccagcgtgtacctg
tctaaccgagacagtgtgtttaccagttcggtggcgcaggatttacagcgtttgctgcaa
gcggtgctgacgccagaaaatgaccgtgcgctgcgtgcaagtcttgcctctgagctgttt
gccctcgacgcagcaagtttggatgcacttaataacgatgaagtggtgtgggaaaacgcc
gtaaacgaattcaaagaatatcgcaaactttgggttcaacgtggtgtgctgccgatgttg
cgcgcggtgatcagcaaacgtcatattgccgagcgattactagaagaaggtgcgagttca
cagggtgagaatggtgagcgagtacttaccgatttaatgcacatcggtgaactgcttcaa
caagccagtaatgaactggatagcgaccacggtctgctgcgttggctcgctcagtctatc
agtgatgcggaaaacggtttgggtggcagtgatgaccaaatccaacgtttagaatcggaa
cgtaacttagtgcagatcgtaactattcacaaatcaaaaggcttggagtatgacctcgta
tttctgccgtttgtgttcagctatcgagaagccagcgaagccaaatattacgatgcagcc
agtgaccgcacggtactggatatcactggcaacgatgcgtccatgaagcaagcggataaa
gagcgtttggcggaagacttacgcttgatatacgtggcactaacgcgtgctgtgtatgcg
tgttttattggagcctcgcctttgcgcaatggtcgttcgaccaaagagccaactggcgta
caccgcagtgcgattggctatttgattcagaatggtcaagaaggtggcattaacgatttg
caccaaggtttaacaaagcaacaagacgagcttgattgtgtcgttgtggccgatccgccg
cagcaactcgaagacaactacgtagcgccacaagaagaaatacacgatcttagcgcgaaa
gagctgcaaaaccctatcgacagaaactggcgcatcaccagttattctggcttggtcaag
caaggctctcatcacgccgagcatgatgccacgattgagattacgggctttgatatcgac
tcatctgaagagcaagacgaagcggatttggtggagccagagcgttctatttttaccttc
cctcgcggtgcgcgtccgggtacgttcctgcacagcctgtttgaggaaattgaatttact
cagccagccacgacggaagagaatacacaaatcatccttggcttgatggaaagcgaacag
ctcgatgaagagtggttgcccattttacagcaattgattgataccgtactcgcaactccg
ttggatggtaagtctttgctgctgaatcaaaaagcaccgtcgcaacgtttggtggagatg
gaatttttgttgccgattgaagtgttgtctgcaccggcgttaaaccgagtcattcaacgt
cacgatccgttgtcggcgaaagcgggggatttaggtttccaaaccgtgcaaggtatgctc
aaaggttttatcgacttggtgtttgaacatcaaggtaaatactacgtgcttgactggaaa
tcgaatcatcttggcgacgatgtgacgcactaccatggtgaggctctgaaatcggcgatg
gctgatcaccgctacgatttgcagtaccagatttatgcgttagcactgcatcgtttccta
cgcagccgattggcgaattatcaatatgatcatcacttcggtggcgtgtattacttgttc
ttgcgcggtatggatgggcagagtgaccacggcatttttgccgcgaaaccaaccttagag
ttcttacaagagatggatcgtttgattgatggtcaagcacttgaaacgcgctcaactcaa
gccgggcagatggagctactttaa
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