Vibrio parahaemolyticus BB22OP: VPBB_2389
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Entry
VPBB_2389 CDS
T02409
Name
(GenBank) 23S rRNA (Uracil-5-) -methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpb03009
]
VPBB_2389
Enzymes [BR:
vpb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
VPBB_2389
Ribosome biogenesis [BR:
vpb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
VPBB_2389
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
RrnaAD
MTS
Cons_hypoth95
Methyltransf_11
Methyltransf_23
PCMT
Methyltr_RsmB-F
Methyltransf_15
PrmA
Methyltransf_12
Ribosomal_L22
Motif
Other DBs
NCBI-ProteinID:
AGB10846
LinkDB
All DBs
Position
1:complement(2676563..2677882)
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AA seq
439 aa
AA seq
DB search
MARIFQPKKKTQLNTRHQAVQVERLDHHGAGIAYLKKKPLFIDGALPGEEVVTQLVEEKS
KFARGKLIKILKPSDARVEPFCPHYHECGGCDLQHLNYDQQLTHKQQTLRQLMRKFAGSD
IDLDAPVLGESLGYRRRARVSLFVDKKTRQLHFGFRKKQSKQIAQVTDCPVLAPELNALL
PEIYSVLTAFKKPEQLGHVELVLGDNGPCITLRHLSNLADEEVSALVELATRHQASLYLM
PETDQLNLVAGEVPFYQEAGVKIPFAPNNFIQVNQAVNQKMVEQAIEWLDPQSDERVLDL
FCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQAWA
AEKFDKVLLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLEQGYQLTKLGM
LDMFPHTSHLESMALFEKS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtatctttcaacctaaaaagaaaacgcaattaaacactcgtcaccaagcggta
caagtagagcgtttggatcaccacggcgcaggtattgcttaccttaaaaagaaaccgttg
ttcattgacggcgcattaccaggtgaagaagtggtgacgcaattggtggaagagaagagc
aaatttgctcgcggcaagctgattaaaatcctaaagccaagcgacgcgcgcgttgagcca
ttttgtccgcattatcatgaatgtggcggctgtgatttgcagcaccttaattatgaccaa
caattgacgcacaaacagcagacgctgcgtcagttaatgcgaaaatttgctggcagtgac
attgatttggatgcgccagtattgggcgagtctttaggttaccgacgtcgtgctcgcgtg
agtttgtttgtcgataagaaaacgcgtcagttgcacttcggcttccgcaaaaagcaaagc
aagcaaattgcacaagtgacggattgtccggtattggctcctgagttgaatgcgctattg
cctgagatttattcggtgctaacagcgttcaaaaagccagagcaattggggcatgtagaa
ctggtgttgggtgacaacgggccttgtatcacgctgcgacacttaagcaatttggccgat
gaagaagtcagtgcattagttgaattagcgacacgccatcaagcctcgttgtatctgatg
ccagaaactgaccaacttaacttagttgcaggtgaggtgcctttctatcaagaagcgggc
gtaaaaatcccttttgcaccgaacaactttattcaggtcaaccaagcggtgaaccagaaa
atggtggaacaggcgattgagtggttagaccctcaaagtgacgaacgagtgttagatttg
ttctgtggattaggcaacttcagcttgccgatcgcaaagcgtgctaaacatgtcgttggc
gtagaaggtgtggctgagatggtcgaaaaagcctcaaataatgcatctttgaaccaaatc
aataacgcgcaattttatcacgctaaccttgagcaggattttgacggccaagcttgggct
gcggaaaagtttgacaaagtattgctggaccctgcacgagcaggagcgagtgggatcatc
gatcaagtttctgcgcttggcgctcagcgtgtagtttatgtttcttgtaatcctgctacc
cttgcaagggatagtcagagcttgctagagcaaggctatcaactaaccaaattaggtatg
ctggacatgttccctcataccagccatctagaatcgatggcgctgtttgaaaagtcttaa
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