Vibrio parahaemolyticus BB22OP: VPBB_2673
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Entry
VPBB_2673 CDS
T02409
Name
(GenBank) 3'-to-5' oligoribonuclease (orn)
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VPBB_2673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpb03019
]
VPBB_2673
03009 Ribosome biogenesis [BR:
vpb03009
]
VPBB_2673
Messenger RNA biogenesis [BR:
vpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VPBB_2673
Ribosome biogenesis [BR:
vpb03009
]
Eukaryotic type
Pre-60S particles
RNases
VPBB_2673
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AGB11127
LinkDB
All DBs
Position
1:complement(2989099..2989644)
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AA seq
181 aa
AA seq
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MSFSDQNLIWVDLEMTGLDPETHKIIEIASIVTDSELNILAEGPVLAVHQPEEELAKMDD
WCTNTHTASGLVERVRNSKISEQDAVTQTIEFLEKWVPKGVSPICGNSIGQDRRFLYKHM
PELEEYFHYRYLDVSTLKELTRRWKPEVLDGFSKQGTHLALDDIRESIAELKYYRETIFK
I
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttagcgatcaaaacctaatttgggtggatttagagatgacagggcttgatcct
gaaacgcacaaaatcatcgaaattgcttctatcgtcacggatagcgaactgaatatttta
gctgaagggccagtgcttgccgtgcatcagccagaagaagagctagccaaaatggacgat
tggtgcaccaacacgcacacggctagcggtttggttgagcgcgttcgtaacagcaaaatc
tctgagcaagatgccgtaacacagaccatcgaatttttagaaaaatgggtaccaaaaggc
gtatcgccaatctgcggtaacagcatcggtcaggaccgtcgtttcttgtacaagcatatg
cctgaactggaagagtacttccactaccgttacttagatgtgagtacactaaaagagcta
actcgtcgttggaagccagaggtgctggacggtttctctaaacagggcacacatttagcg
ttggacgacatccgtgaatctattgcggagttaaagtactatcgcgaaacgatctttaag
atctaa
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