Vibrio parahaemolyticus BB22OP: VPBB_2844
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Entry
VPBB_2844 CDS
T02409
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03420
Nucleotide excision repair
vpb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VPBB_2844
03430 Mismatch repair
VPBB_2844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_2844
Enzymes [BR:
vpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VPBB_2844
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VPBB_2844
MMR (mismatch excision repair)
Other MMR factors
VPBB_2844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AGB11291
LinkDB
All DBs
Position
1:complement(3199209..3201383)
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AA seq
724 aa
AA seq
DB search
MMDPSLLLDDLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
QRLLKRLIKAQNLDEKQWPARQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQE
ACDRVGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMTGP
ECHVMIVGDDDQSIYGWRGAKVENIEKFTREFPSVTTIRLEQNYRSTKTILEASNTLIAN
NTERMGKELWTDGVVGEPISVYSAYNELDEARFAVNKIKEWQDKGGALNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALAYMRLMANRNDDAAFERVVNTPTRGLG
DKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRFIELITALEDDTLEMPLHE
QTDHVIKYSGLFTMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEEMSLLTAFLTHAA
LEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKENFNETGFSLGSRVMHPKFGEGTIINFEGSGPQSRVQIAFNGEGIKWLVTAYAR
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccatctctattactcgacgatttgaacgataaacaacgtgaagccgttgct
gcacctctagaaaacttgctcgtccttgctggtgcagggagtggtaagactcgtgttctt
gttcaccgtatcgcttggttgatgtcggtagaacaagcgtctccattctcaatcatgtcg
gtaacctttaccaacaaagcggcagcggagatgcgtggccgtattgaagagttgatgatg
ggcagtgcgtcaggcatgtggaatggtacctttcacggtatttgtcaccgcattttgcgc
gcgcactatcttgatgccaagctaccggaagattttcaaatcatcgacagcgacgatcaa
caacgtttactgaagcgtctgatcaaagcacaaaatctggatgaaaagcagtggcctgca
cgccaagtggcttggtggattaacggcaaaaaagacgaaggcctgcgcccagcacatatc
gatgcttaccacgatcctgtgaccaaaacctacttgcagctatacaccgcttatcaagaa
gcgtgtgaccgtgtaggtttggtcgactttgcagaaattctgcttcgcgctcatgagcta
ctgcgcgataacaagtttgtccgcgagcactaccaggcacgctttaaacacattctggtt
gacgagttccaagacaccaacaatatccaatacgcttggctacgcatgatgacggggcct
gagtgtcatgtgatgatcgtgggtgacgatgaccaatcgatttacggttggcgcggagca
aaagtcgaaaacattgagaaattcacccgtgaattcccaagcgtaaccaccattcgccta
gagcagaattaccgttccaccaagaccattttggaagcttccaacaccttgatcgccaat
aacactgagcgtatgggtaaagagctgtggactgacggcgtcgttggtgagccgatttcg
gtttacagtgcttacaatgagttggacgaagcccgttttgcggttaacaaaatcaaagag
tggcaagacaaaggcggtgcattgaatgatgcagcgatgttgtaccgcaacaacgcccag
tctcgtgtactggaagaagcgttgattcaagctggtctaccataccgtatctatggtggt
atgcgattcttcgagcgtcaggaaatcaaagacgcactggcctacatgcgtttgatggcc
aaccgtaatgacgatgctgcatttgaacgtgtggtgaatacgccaactcgtggtttaggt
gacaagacactagaaaccattcgccgtgcggcgcgtgatcgtggttgcacgatgtgggaa
gccagcgttgcgatgttggatgaacaagtgctcgcgggtcgagccgctggggcattaggt
cgctttatcgaacttattaccgcactcgaagacgacacgttagagatgccgttgcacgag
caaacagaccatgtgatcaagtactctggcttgtttaccatgtatgagcaagagaagggc
gaaaagtctaaggctcgtattgagaacttggaggaattggtgaccgcaactcgccaattc
gagaagcctgaagaagcggaagagatgtcgctgctgactgcgttcttgactcatgcggcg
ctagaagcgggtgaagggcaagccgacgaatttgaagatgcagttcaattgatgacactg
cacagtgcaaaaggcttggaattcccattggtgtttatggtgggcgttgaagaaggcatg
ttcccaagccagatgtcggcggaagaggcagggcgtttagaggaagagcgccgcctgtgc
tacgtcggtatgacgcgcgcgatgcaaaaactctacatcacttacgcggaaatgcgccgt
ttgtatggtcaagataagtaccataagccatcgcgttttattcgtgagttgccggaaacg
tgcctggacgaagtgcggatgaaagcgcaagtcagccgacctgcaagcagtggtcgcttt
agccaaactgcggtgaaagagaacttcaacgagacgggcttttcacttggttcacgcgta
atgcatccaaagtttggcgaaggcaccatcattaactttgaaggcagcggtccacagagt
cgcgttcaaatcgcgttcaatggtgaaggcattaaatggttagtgactgcttacgctaga
ctagagaaactgtaa
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