Vibrio parahaemolyticus BB22OP: VPBB_2858
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Entry
VPBB_2858 CDS
T02409
Name
(GenBank) Thiamin biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb00730
Thiamine metabolism
vpb01100
Metabolic pathways
vpb01240
Biosynthesis of cofactors
Module
vpb_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
VPBB_2858
Enzymes [BR:
vpb01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
VPBB_2858
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Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
AGB11305
LinkDB
All DBs
Position
1:complement(3213224..3215164)
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AA seq
646 aa
AA seq
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MSSRKQARLEAKQFIDTLSVQPYPNSTKVYVEGSRPDIRVPMREISLADSLIGGTKEAPI
FEPNEPVRVYDTSGVYTDPDYSIDLYSGLPKLREGWIEERNDTEILEDVSSVYAKERLDD
ETLDDLRYGNLPRIRRAKAGKCVTQLHYARKGIVTPEMEYIALRENMGRAKYRDDVLTQQ
HPGQSFGANLPKDITAEFVRKEVAEGRAIIPSNINHPESEPMIIGRNFLVKVNANIGNSS
VTSSIEEEVEKLVWATRWGGDTVMDLSTGRNIHETREWILRNSPVPIGTVPMYQALEKVN
GIAENLNWEVMRDTLIEQAEQGVDYFTIHAGLLLRYVPMTAKRVTGIVSRGGSIIAKWCL
AHHQESFLYTHFREICEICAKYDVALSLGDGLRPGSVADANDEAQFAELRTLGELTKIAW
EYDVQVIIEGPGHIPMHMIKENMDQQLEHCHEAPFYTLGPLTTDIAPGYDHITSGIGAAM
IGWYGCAMLCYVTPKEHLGLPNKEDVKTGMITYKLAAHAADLAKGHPGAQVRDNALSKAR
FEFRWEDQFNLALDPDTARAFHDETLPQESGKVAHFCSMCGPKFCSMKISQEVREYAKDT
EQVAADQAISIKMLDDPLEGMRKKSEEFRATGSELYHPAVHAEADE
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtcgcaaacaagcgagactggaagcaaaacagtttattgatactctctcggta
cagccgtacccaaactcaaccaaagtgtatgtagagggttctcgtcctgacatccgagtg
ccaatgcgtgaaatttctttggctgatagcctaattggtggcaccaaagaggctccaatt
tttgagccgaatgagcctgtacgtgtttatgacacctctggtgtgtataccgacccagat
tactctatcgacctttatagtggcttaccaaagcttagagaggggtggattgaagaacgc
aatgatactgaaatccttgaagatgtgagctctgtttacgcaaaagagcgtcttgacgat
gaaaccttagatgatttgcgttatggcaacttaccacgtattcgacgagctaaagccgga
aaatgcgtcactcaactacactatgctcgtaaaggcattgttactccggaaatggaatac
attgcactgcgtgagaacatgggtcgcgctaaatatcgcgatgacgtgctgactcagcag
catcctggtcaaagcttcggtgcaaatctacctaaagacattactgcagaattcgttcgt
aaagaagtcgcagaaggtcgcgccatcattccttcgaatatcaatcatccagaatctgaa
ccaatgattattggccgtaacttcttagttaaggtgaatgccaatattggtaactcatcg
gtcacgtcttcaatcgaagaagaagtggagaaacttgtctgggcgacacgctggggtggc
gataccgtgatggacctttctaccggccgcaacattcacgaaactcgcgaatggatttta
cgcaatagcccggtgccaattggtacggttcctatgtatcaggctttggagaaagtaaat
ggcattgctgagaacctgaattgggaagtcatgcgtgacacgttaatcgaacaagcagag
cagggcgttgattactttactatccatgcgggtttactacttcgctatgttccaatgacg
gcgaaacgagtgacggggattgtttcgcgtggtggctcgattatcgctaagtggtgtcta
gcgcatcaccaagaaagcttcttatacacccatttccgcgagatctgtgaaatttgtgcg
aagtacgatgtcgctctatctcttggtgatggcttgcgtcctggctcggttgcagacgcg
aacgatgaagcgcaattcgcagagctgcgtacgctcggcgagttgactaaaatcgcatgg
gaatatgatgtgcaggtcatcattgaaggccctggccatattccaatgcatatgattaaa
gaaaatatggaccaacagttggaacactgtcatgaagcgccgttctacaccttgggtcct
ctaacgacagatatagctccgggttatgaccatattacatccggtattggcgcggcgatg
attggttggtatggctgcgctatgttgtgttacgtgacccctaaggagcacttggggctt
ccaaataaagaagacgttaaaaccggtatgatcacctacaagctagctgcgcatgctgcg
gatttagcaaaagggcatcctggagcacaagttcgtgacaatgctttatcaaaggcacgt
tttgaattccgctgggaagatcaatttaacctcgctttagaccccgataccgcacgtgca
tttcatgatgaaacgctgccgcaagagtctggaaaagtagcgcacttctgctcaatgtgc
ggccctaaattctgctcaatgaagatttctcaagaagtcagagagtatgccaaagataca
gagcaagttgccgcggatcaggcgatttctatcaagatgttagatgacccgctggaaggc
atgcgtaagaagtctgaagagtttcgtgcgacaggctcagagctttatcacccagccgtg
cacgccgaggcggatgagtaa
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