Vibrio parahaemolyticus BB22OP: VPBB_A0361
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Entry
VPBB_A0361 CDS
T02409
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VPBB_A0361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpb03019
]
VPBB_A0361
Enzymes [BR:
vpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VPBB_A0361
Messenger RNA biogenesis [BR:
vpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VPBB_A0361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AGB11735
LinkDB
All DBs
Position
2:complement(385571..387139)
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AA seq
522 aa
AA seq
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MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTGKTAGFTLPIL
ERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHLPLSSAVVFGGVKINPQMLRL
RKGADVLVATPGRLMDLYNQNAVKFDQLEVLVLDEADRMLDMGFIRDIRKILALLPKQRQ
NLLFSATFSDEIRDLAKGLVNNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKD
GDWKQVLVFTKTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVAT
DIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCALEASELFAIER
LIKEVLPRKELEGFAPTNVVPESKLDMRPIKPKKPKKPKKPKAPNAAGENAPATEKKAGN
GANKPKRRFNGGNNGNKNSTNQGGADKPKGNRENQGRAHSKPDDRKPNGNKPNGNKPNGN
KPNGNKSGNAGKLSGNRKPNNAKPAGNKPSGQRRKPRPQATN
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgggttttacctcgttaggtctatctgctccaatccttaaagctattcaagagaaaggc
tacgacaccccttcgccaattcaggcaaaagcaattcctgctattttggaagggaaagac
gtaatggcagcagcgcagactggtacaggtaaaactgcaggctttacgctaccgattctt
gagcgtttatcgaacggccctcgcgttcgtgctaaccaagttcgtgcacttatcctgacg
ccaacgcgtgaacttgcggctcaggtgcaagaaaacgtgtttatgtacggccgtcatctt
ccactaagcagtgcggttgtttttggtggtgtgaagatcaacccgcaaatgctgcgtctt
cgcaaaggtgcggatgtgttggtagcaacaccaggccgcctgatggatttgtacaaccaa
aatgcagtgaagttcgaccaactagaagttctggtactggatgaagctgaccgcatgttg
gatatgggctttatccgtgacattcgtaagatcctagctctgctaccaaaacaacgtcag
aacctactgttctcggcgactttctcggatgaaatccgcgaccttgcgaaaggcttggtg
aacaacccggttgagatttcagtgaacccggcaaactcgacggcgagaacggttgagcaa
agcatctacccagcagacgtgaagaagaaagcaccgatgttggttaaattgatcaaagac
ggcgattggaagcaagtgctggtgtttacgaaaacgaaacacggcgcaaaccgcctggcg
aagttccttatagaacaaaacctacctgctgcagccatccacggtaacaagagccaaggc
gcacgtaccaaagcactggcggattttaaatcgggtgaaattcgtgtgttggtcgcgacg
gacattgctgcacgcggtatcgatattccgcaattaccacaagtggtgaactttgagcta
cctaaagtggcagaagattacgttcaccgtattggtcgtactggccgcgcgggcgaagta
ggtaaagcgatttcactcgtgtgtgcgctagaagcatctgagttgtttgcgattgaacgt
ttgattaaagaagtgctaccacgtaaagagttggaaggttttgcgccaaccaatgtggtt
cctgaatctaaactggatatgcgcccaatcaaaccgaaaaaacctaagaagccaaaaaaa
ccaaaagcgccaaatgctgcgggtgaaaacgctccagcaaccgaaaagaaagcaggcaat
ggtgcaaacaaacctaagcgtcgcttcaacggtggtaacaacggcaacaaaaacagcacc
aaccaaggcggtgcagacaagcctaaaggtaaccgtgaaaaccaaggccgtgcacacagc
aaaccagatgaccgcaaacctaacggcaacaagccaaatggcaataaaccgaatggaaat
aaaccaaacggtaataagagtggcaacgctggtaaactgtctggtaaccgcaagccaaac
aatgctaagcctgcaggaaacaaaccatcaggccagcgtcgtaagcctcgtccacaggcc
acaaactaa
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