Vibrio parahaemolyticus BB22OP: VPBB_A0555
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Entry
VPBB_A0555 CDS
T02409
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpb03016
]
VPBB_A0555
Enzymes [BR:
vpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VPBB_A0555
Transfer RNA biogenesis [BR:
vpb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VPBB_A0555
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AGB11929
LinkDB
All DBs
Position
2:complement(595403..597409)
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AA seq
668 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGSIKATDKGFGFLEVDSKTSFFIPPAYMKKCIHGDKV
VAIIRTENEREVAEPQELIEQSLTRFIGRVKMFKGKLNVVPDHPQLKKLSLKAKLKKGLK
PDNFAEGDWVVAHLVRHPLKGDNTFFVEISEKITDADDKIAPWWVTLAQNDLPNSEPAGI
ENWELKDDADLERIDMTHVPFVTIDGESTKDMDDALYAKKTESGDFELTIAIADPTAYIT
PEDEMDKVARERGYTIYLPGRNIPMLPRDLADNLCSLIEGEIRPAICCTVTVSKDGVIGD
DIKFFAANIKSHARLAYDHVSDWLENDNSDAWQPSEEIATIVRDLYEFSLARAEWREKNA
VVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEESMITANICAGRTLREKFETGVFNT
HAGLKPEKIEEVVQLVNPEGTLEFTAESIATLEGFAALRRWLAVQETSYLDNRIRKFQAY
SEVGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAVILDKEPVQKPDDQVGEELAL
HRKHHKIAERNVSDWLYARTLADEPSKQTCFTGEIFDINRAGARVRLLENGAAAFIPGAL
ILDNKERIECNGDNGTISIDKEVVYKLGDTLEIVLADVNQENRSLVAKPTQVFADQPAAQ
TEQTVSEE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctattagcccagcttaagcagcaaatccaagaaaacctgcct
aaaaaagaaggttcaatcaaagcaacagataaaggctttggtttcctggaagtggacagc
aagaccagcttcttcatcccaccagcgtacatgaaaaagtgcattcacggcgacaaagtc
gtggccatcatccgtactgaaaatgaacgtgaagtcgcagaaccacaagagctgatcgaa
caatctcttactcgctttatcggtcgagtaaaaatgttcaaaggcaagctaaatgtcgtg
cctgaccatcctcaactaaagaaattgtctctaaaagcgaaactgaagaaaggtttaaag
cctgacaacttcgcggaaggtgattgggttgtagcacatcttgttcgtcacccgctaaaa
ggcgacaacacgttcttcgttgaaatttcagagaaaatcactgacgctgacgacaaaatc
gcaccgtggtgggtaacgctagcgcaaaacgatctaccaaactcagaacctgctggcatt
gagaactgggaattaaaagatgacgccgatctagagcgcatcgacatgactcatgttcct
ttcgtcacaatcgatggtgaatcaaccaaagatatggatgacgcgttgtacgcgaagaaa
acagaatctggtgattttgagttaactatcgcgattgctgacccaactgcgtacatcaca
cctgaagacgaaatggataaagtcgcgcgtgagcgtggttacaccatttatctaccaggc
cgtaacatcccgatgttacctcgcgatctagcggacaacctatgttctctaattgaaggc
gaaatccgcccagcaatctgctgcaccgtaacagtgagcaaagacggtgtgattggtgac
gatatcaaattcttcgctgcaaacatcaagtcacacgcgcgcctagcatacgatcacgtt
tctgattggctagaaaacgacaactctgacgcatggcaaccttcagaagaaatcgcaacg
atcgtacgcgatctatacgagttttctctagctcgcgcagaatggcgtgagaaaaacgca
gtcgtattccctgaccgccctgactaccgttttgagctaagtgaagacaatgacgttatc
gctattcacgctgacatgcgccgcagtgcaaaccgtcttgttgaagaatcgatgatcacg
gcgaacatttgtgcaggccgtacactgcgtgaaaaattcgaaactggcgtattcaacact
cacgcaggtttgaaaccagagaaaatcgaagaagttgtgcaactcgttaaccctgagggt
acgctagaattcacagcagaatcgattgcaacgcttgaaggctttgcggctctacgtcgt
tggttagcggttcaagagacatcttacctagacaaccgcattcgtaagttccaagcatac
agtgaagtgggtaaccaacctcttcctcattacgcgatgggtctagacatttatgcgact
tggacatccccgattcgtaaatacggcgatatgatcaaccaccgtatgctaaaagcggtg
attctagataaagaaccagtacaaaaacctgacgatcaagtgggtgaagaactggcactg
caccgtaagcaccacaaaattgcagagcgtaacgtgtctgattggctatacgcacgcact
cttgcggatgaaccaagcaagcaaacttgtttcacaggtgagattttcgatattaatcgt
gctggtgcacgtgttcgacttctcgaaaatggtgcagcagcctttattcctggtgccctg
attcttgataataaagaacgaattgagtgcaatggcgacaacggcacaatctctatcgat
aaagaggtggtgtacaagctgggtgacacattggaaatcgttcttgcggacgttaaccaa
gaaaaccgcagtttagttgcaaagccaacacaggtatttgctgatcaaccagcagcacaa
acagaacaaactgtaagtgaagaataa
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