Vibrio parahaemolyticus BB22OP: VPBB_A0789
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Entry
VPBB_A0789 CDS
T02409
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VPBB_A0789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpb03019
]
VPBB_A0789
Enzymes [BR:
vpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VPBB_A0789
Messenger RNA biogenesis [BR:
vpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VPBB_A0789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
AAA_22
Helicase_RecD
AAA_19
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGB12163
LinkDB
All DBs
Position
2:880190..881443
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AA seq
417 aa
AA seq
DB search
MSVNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAAFGLP
IIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQKNKL
EEGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQ
IMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGS
RNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRALIAT
DVAARGLDIQALEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLRAIET
LLDQRLPQEWLEGFEPSLIEEVEPERDGGGRRKSRSSEKRKLKAKLAIHKNRGKHRK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaattttgctgatcttggcattgaacaacagttagtcgaaacgttgaacaat
atgaatattgtgacgccaacgccagtccaagaaaaatcgattccccacgtactggaaggc
aaagatcttcttgcggctgcgcaaacgggtaccggtaaaacggcggcatttggtttgccg
attattcaggcggtacagcaaaagaaacgtaatggcacacctcacgctctcatcctagtt
ccgactcgtgaattggcgcagcaagtgtttgacaatttaacgcaatacgcggaacacacg
gatctacgtattgtttgtgtgtacggcggtacaagtattggcgtgcaaaagaacaagttg
gaagagggcgcggatattcttattgctacgccgggccgattgttagaccacttgtttaac
ggcaacgtaaacatttctaaaactggcgtgttggtgcttgatgaagctgaccgaatgttg
gacatgggtttttggcctgatctgcaacgcattcttcgtcgactaccgaatgacaaacaa
atcatgctgttttcggcgacgtttgaaaaacgcattaaaaccatcgcttacaaactgatg
gattctcctgttgaggtggaagtgtctccagcgaatacaacggcagaaacggttaagcag
atggtgtatccagttgataaaaagcgtaagcgtgagttgctagcgtatttaattggttca
cgaaactggcaacaagtgcttgttttcactaaaaccaaacaaggcagcgacgagcttgca
aaggagctcaaactggatggtattaaagcggtttcgattaatggggataaatcgcaaggt
gctcgccagcgtgcacttgatgaattcaagcaaggtaaagttcgtgccttgattgcgaca
gatgtggcggctcgcggtctagatattcaagcgcttgaacaagtggtgaactttgatatg
ccatttaaagccgaagactacgtacatcgtattggtcgtactggccgcgcgggtaaatcc
ggtttggccgtttcgttaatgagccgagatgaagaatatctgcttcgtgcgatcgaaacg
ttgttagaccagcgtttgcctcaagaatggctcgaaggattcgaaccaagtctaatcgaa
gaggtagaacctgagcgtgatggtggcggtcgtcgtaagagtcgttcgtcagaaaagcgc
aaactaaaagcaaaactcgcgattcataaaaatcgtggcaagcaccgcaagtaa
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