Vibrio parahaemolyticus BB22OP: VPBB_A0929
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Entry
VPBB_A0929 CDS
T02409
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vpb
Vibrio parahaemolyticus BB22OP
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpb03400
]
VPBB_A0929
DNA repair and recombination proteins [BR:
vpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VPBB_A0929
Archaeal homologous recombinant proteins
VPBB_A0929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
AAA_16
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AGB12303
LinkDB
All DBs
Position
2:complement(1043207..1046263)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPIKLTMQAFGPFAKTETIDFEKLGSNALFLINGPTGSGKTSILDAICFALYGETTSNE
RQGIQMRCDLASQQLLTEVTLDFSLHGKVYRVTRAPEQEAPKARGEGLTVRKHTASLYEL
GETEKLITSKTTQVKTEITNIIGLNETQFRQVMVLPQGKFRELLLATSKEREEIFGQLFE
TDIYKKIEYALKDKASSISKAKDEFDNQIRGALQVAGVTSEAELTEQRETLSVQFASAQK
REQESLAQLNAVKTEIQRAETLSNEFKKREQAEASLHLHLQQTETISARQLQLENAKKAS
RIELPYITLQNAAQQVQDLNQKVAVLSQDLKAADDVLKTKEQAFQQAKEQANRVPTLTEQ
QYQLESMKSKLVEKVELDSAIAAGLQQKSEFEETLKKYIVFREKLTQDALQAQKVLEQAR
IDVASIGSVDAEIKQQQRLMSDLQKLGNLNQELSKLDALTSSKQASVTQAKSYYENLQRE
ADALELSWHNAQAAVLALRLQTGEKCPVCGSTEHPQPAQFVGDEVTKEQVQQARHQEREA
QITLNQLSNQLEQHNIAIAQYTQQIEQMVSELGQNANLELQALQASIHQLNERLQHLNAI
NIAQLEQSVNELNQRCVVGEGKINDLQNQMAANESTIKANQQQLAKLSASLGDKYTSLEQ
LENDLTQIHKQIVELNNGLESAQAQLQQAVLAKSNVDSQLTTHQQWLLEANSKLENAKTE
WESALKASAFADEAHFLQSKVSEQQTQTWQQEIDNFKQTKIQLEQTLADLNQVLKEVEKP
NLEALNGSLSTAQHSYLEIRNQLDSTRSLFEGLEKVRNEISNLHDKNRKLEEEYKVFGTL
YDVASGKTGSRISLHRFVLGVLLDDVLIQASQRLRLMSKGRYVLARKTEGFKGAAGRGLD
LVVEDGYTGKMRDVATLSGGESFMAALALALGLSDVVQSYSGGIRLDTLFIDEGFGSLDP
ESLDLAIQTLVDLQQTGRMIGVISHVSELKEQMALRIDVKPSRFGSTVSVKSQMLLSK
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatcaaactcacgatgcaagcctttggtccgtttgcgaaaacagaaactatt
gattttgaaaagcttggaagtaatgctttatttttaattaatggacctactggctcaggt
aaaacctcgatcttagacgcgatttgctttgcgctatatggcgaaaccactagcaatgaa
cgtcaagggatacaaatgcgctgcgatttagcatcgcaacagctgctaaccgaagtaact
ctagatttctctttgcatggcaaagtttaccgagtgactcgcgcgccggagcaagaagct
ccgaaagcccgtggtgagggcttgaccgttcgcaaacacacggcgtcattgtatgaattg
ggtgagacagaaaaactcatcaccagcaaaacgacccaagttaaaactgagatcactaat
attattggtttgaacgaaactcagttccgtcaggttatggtattgcctcaaggtaaattt
cgcgagctgttattagcaacgtctaaagagcgtgaagagatctttggccagttgttcgaa
acggatatctacaaaaagattgaatacgccttaaaagacaaagcaagctcgataagcaaa
gcaaaagatgagtttgataaccaaattcgtggcgcgcttcaagttgcgggagtgacatca
gaagcggaattaacagaacaacgtgaaacgctgtctgtccaattcgcgtcagcgcaaaag
cgagagcaggaatcgcttgctcagttaaatgccgtgaaaacagaaattcagagagctgaa
acgttaagtaatgaatttaaaaagcgtgaacaagcagaagcctcgctccatctgcacttg
caacaaactgaaaccatttcggctcgccaactgcagttagagaatgcgaaaaaggcgagt
aggattgaactgccttatatcacgctgcaaaatgccgcccagcaagttcaagatttaaac
caaaaggttgccgttctttctcaagatttaaaagccgctgacgacgtcttaaaaacgaag
gaacaagccttccaacaggcaaaagaacaagctaatcgggttcctacgctgacagagcag
caataccaacttgaaagcatgaaaagcaagttggtcgagaaggttgaactggatagtgcc
attgctgcaggacttcagcagaaatcagaatttgaagaaacgctaaaaaaatacatagtg
tttagggaaaaactgacgcaagacgccctgcaagcgcaaaaagtgttggagcaagctcgc
attgatgtcgcaagtattggtagtgtggatgcagagatcaaacagcagcagcgtttgatg
tcggatcttcaaaagttaggtaatttaaatcaagagctttcaaagttagatgcattgacg
tcaagtaaacaagcctcggtaactcaagccaagtcttattatgaaaaccttcaacgtgaa
gcggatgcgttagagctcagttggcataatgcgcaagcggcagttcttgctcttcgttta
caaactggagagaagtgtcccgtttgtggtagtaccgaacatcctcagcctgctcaattt
gttggtgatgaagtcacaaaagagcaagttcaacaggctcgtcatcaggagcgtgaggct
caaatcacgctgaaccaattgagcaaccagttggaacaacacaatattgcgattgctcaa
tacacgcagcaaattgagcaaatggtttcggagttggggcagaacgcgaacctagagctg
caagcattacaggcatcaattcatcaactcaatgaacgattacagcatttgaacgcaatt
aatattgctcagcttgagcaaagcgtgaacgagttgaatcaacgttgtgtggttggcgaa
ggtaagatcaacgatttgcaaaaccagatggctgcaaatgaatcgacgattaaagcaaat
cagcagcagttagcgaaattgagtgcgtcattaggtgataaatacacatcactagagcaa
ctagaaaacgacttgactcagatacacaagcaaattgttgagctgaataacggcctagaa
tctgcgcaagcgcagttacaacaagctgtgcttgcgaaatcaaatgtcgatagtcagttg
acgactcaccaacagtggctgttggaagcgaatagtaaactggaaaatgctaaaaccgaa
tgggaaagcgcactaaaagcgagtgcgtttgctgatgaagcgcacttcttacagagtaaa
gtgagtgaacaacaaactcaaacttggcaacaagaaatagataactttaagcagacaaaa
attcagttagaacaaactcttgcggatttaaatcaagttttgaaggaggtcgagaagcct
aatttagaagcgcttaacgggagtttaagcactgctcaacattcgtatctagaaattaga
aatcagctggatagcacgcgttcactgtttgagggtttggaaaaagttcgcaatgaaatt
tctaatctgcacgataaaaaccgtaaattagaggaagagtacaaagttttcggtacgctt
tatgatgtcgccagtggtaaaacgggcagccgtatcagtttacaccgatttgtgttgggg
gttttattggatgatgtgttgattcaagcttctcaacgactgcgtttgatgagcaagggt
cgatatgttctagcgcgtaaaacagagggttttaaaggtgctgcagggcgaggacttgat
ctcgtggtggaagacggttacaccggaaaaatgcgtgatgttgcaacgttgtcgggggga
gaatccttcatggcagctttagctttggcattaggcttgtctgatgtcgtgcaatcttac
agcggtggaattcgtttagatacgttattcatcgacgaaggctttggtagcttggaccct
gaatctctcgatctggcgattcaaacattggtcgacttgcagcaaacgggccgcatgatt
ggcgtaatttcacacgtgtctgaactcaaagagcagatggcgttgcgaatcgatgttaaa
ccgtctaggtttggttctaccgtttcggttaaatctcagatgctattgtctaaataa
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