Vibrio parahaemolyticus BB22OP: VPBB_A0992
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Entry
VPBB_A0992 CDS
T02409
Name
(GenBank) GGDEF & EAL family member
KO
K20966
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Pathway
vpb05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VPBB_A0992
Enzymes [BR:
vpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VPBB_A0992
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
HAMP
GGDEF_GdpP
Motif
Other DBs
NCBI-ProteinID:
AGB12366
LinkDB
All DBs
Position
2:1116707..1119070
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AA seq
787 aa
AA seq
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MKLSNRVILLVAPVIILSALVSSYIIYSIQKVTLIKREDSYIQLQMEKLAGQFRQANIFL
NSYAYTLSKSDVLQDYFINHDNPYRERVLFSRLDETADVLSHGYKGDASMAILDGKQNLL
YYTENQYYESSGVVDPKVLEYIATSFAARGEYSHTGFIYNSSGQSILLRYELIDKRTGAP
PVSFDPSNVFFVVVSVSLEVFNDIKHDVEFDTHSVITFADKPIYLDIPLAQTIELLPHFY
AVLSPAEYLMWNKVDKVWLELALSFGIAAFCTITLIVLVLYRYVLHPVSRLDKQLSELES
NQRDNIEKLGTNDEIGRLSSRFFDMYEELNVIYKKTKRLAETDHLTQLANRHRFHQLATR
ELASPPSHLWVIYVDLDNFKYVNDKYGHELGDNLLKVFSTHIKNACQKFSQQYDSPCFGA
RLSGDEFAILLSSNKDVGSIPDLLAKELLKPISNLSQTWANAFPVTASVGIAQYPQDGQD
IAKLLSNADAAMYQAKRAGKNQYAYYSAELNLESQRRSQIERALRKSNVEDEFRLVFQPY
MNNKDNEIEGLEVLLRWDAEGLGPVPPTEFIPIAEQAGLFDKIDRWVFANATEEYHHLRS
IFGKDIVLSINLSSAELNSLEMAQFIHKHVTRNGIKPECIELEITETFAAEQQGTALLDE
LSKLGYRLAIDDFGSGYTSLTQLVQYPVQKIKFDREFLLTLMNTNNGHVIKPIIELCHAQ
NKTVTAEGIEHDVMHKWLSAYRCDFMQGYLFGKPMDKEQLSLWWKSANDDNRFSQPLTTK
LAAEGGI
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaagcaatcgagttatcttgcttgtcgcacccgtgatcattttgagtgcgctg
gtatcgagttacatcatctatagcattcaaaaagtaacactcatcaagcgcgaagatagc
tacatacaacttcagatggaaaaactggcggggcaatttcgacaagccaatatttttctt
aacagctatgcgtacacgctgagtaaaagtgatgtgctgcaggactattttatcaatcac
gacaatccctaccgtgagcgagtactttttagccgcctagatgaaaccgctgatgtcctg
agccatggttataaaggggatgcgagcatggcgatcctcgacggcaagcaaaatctgctt
tattacaccgaaaaccaatattacgaatcgtccggcgttgttgacccaaaggtgctggag
tacatagcgaccagcttcgcggctcgtggtgaatacagccacacagggttcatctataac
tccagtggccaaagcatcttgttgcgatacgaactcattgataaacgaacaggcgcaccg
ccagttagcttcgatcctagcaacgtgttttttgttgtcgtgtccgtatctttagaagtg
tttaacgacatcaaacacgacgtcgaatttgatactcatagtgtgattacgtttgccgat
aaacccatttatctagacatccctcttgcgcaaaccattgaacttctgccccacttttat
gcggtgctctctccagcggagtatctgatgtggaacaaagtggacaaagtatggctagag
cttgcactttcttttggtatcgcggcattttgtaccatcacgctgatcgtcttagtgctc
tatcgttacgttttgcatccagtctctcgcctcgataaacaactcagcgagctagaatcg
aatcagcgagacaacatcgaaaagctcggaaccaatgatgaaattggccgtctttcatct
cgcttttttgatatgtacgaagagctcaacgtcatttacaaaaagaccaaacgtctcgca
gaaactgatcaccttactcagttggctaaccgtcatcgattccaccaacttgccacgcgt
gaactagcctcgccaccttctcatttgtgggtgatttatgtcgatctggataacttcaag
tacgtgaacgataaatatggccatgaacttggcgacaacctgctaaaggtcttctcgact
cacattaaaaacgcctgtcaaaagttctctcagcaatacgacagcccttgttttggcgcg
cgtttatctggtgatgagttcgccatcctactcagctccaataaagacgtaggcagcatc
ccagatttactcgccaaagaactattaaaaccaattagcaacctcagccaaacttgggca
aacgccttcccggtgaccgccagtgttggcatcgctcagtacccgcaagatgggcaagac
atcgcgaaactgttgtccaatgcagacgcagcaatgtaccaagccaaacgtgctggaaaa
aatcagtacgcgtactactcagcagagctaaatttggaatctcagcgacgcagtcagatc
gaacgtgcactgcgtaaaagcaacgttgaagatgagtttaggcttgtgtttcaaccttac
atgaataacaaagacaacgaaattgaaggcttggaagtgcttctacgttgggacgcagaa
ggcttggggccagtgccaccaaccgaatttattccaatcgccgagcaagctgggttgttt
gacaaaatagaccgttgggtgtttgccaatgcaaccgaggaataccatcatttgagaagc
attttcggcaaagacattgtcctgtccatcaacctttcatcggccgaattaaactcgtta
gaaatggcgcaatttattcataaacacgtaacgagaaatggcatcaaaccagaatgtatc
gaactagaaattaccgagacgtttgccgcggaacagcaaggcacggcattgcttgatgag
ctttctaaactgggttatcgacttgctattgatgatttcggctctggctacacgtcgctc
actcaacttgttcaatatccagtacaaaagattaagtttgaccgagaatttctactgacg
ttgatgaataccaataatggacacgtgatcaaaccgatcattgagctgtgccatgctcaa
aacaaaaccgtgaccgccgaaggcattgaacacgacgttatgcacaaatggttgtccgct
tatcgatgtgatttcatgcaaggatacttgttcggaaagccaatggacaaagagcaactt
agcttgtggtggaaatcggccaacgatgacaatcgattctctcagcctcttacaaccaaa
ctcgcggctgagggtggaatttga
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