Vicugna pacos (alpaca): 102525054
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Entry
102525054 CDS
T08098
Symbol
PTCH1
Name
(RefSeq) protein patched homolog 1 isoform X1
KO
K06225
patched 1
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc04024
cAMP signaling pathway
vpc04340
Hedgehog signaling pathway
vpc04360
Axon guidance
vpc05200
Pathways in cancer
vpc05205
Proteoglycans in cancer
vpc05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
102525054 (PTCH1)
04024 cAMP signaling pathway
102525054 (PTCH1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
102525054 (PTCH1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102525054 (PTCH1)
05205 Proteoglycans in cancer
102525054 (PTCH1)
09162 Cancer: specific types
05217 Basal cell carcinoma
102525054 (PTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
102525054
NCBI-ProteinID:
XP_006209293
UniProt:
A0A6I9ID00
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MFNPQLMIQTPKEEGANILTTEALRQHLDSALQASRVHVYMYNRQWKLEHLCYKSGELIT
ETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLQWTNFDPLEFLEELKKI
NYQVDSWEEMLNKAEVGHGYMDRPCLNPADPDCPATAPNKNATKPLDMALVLNGGCHGLS
RKYMHWQEELIVGGTVKNSTGKLVSAHALQTMFQLMTPKQMYEHFKGYEYVSHITWNEDK
AAAILEAWQRTYVEVVHQSVAQNSTQKVLSFTTTTLDDILKSFSDVSVIRVASGYLLMLA
YACLTMLRWDCSRSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAATTQVLPFLALGVG
VDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAFFMAALIPIPALR
AFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCFTSPCVSRVIQVEPQAYT
EAHDSTRYSPPPPYSSHSFAHETQITMQSTVQLRTEYDPHTHVYYTTAEPRSEISVQPVA
LAQDALSCQSPESTSSTRDLLSQFSDSSLHCLEPPCTKWTLSSFAEKHYAPFLLKPKAKV
VVIFLFLGLLGVSLYGTTRVRDGLDLTDIVPRETREYDFIAAQFKYFSFYNMYIVTQKAD
YPNIQHLLYDLHKSFSDVKYVMLEENRQLPKMWLHYFRDWLQGLQDAFDSDWETGKIMPN
NYKNGSDDGVLAYKLLVQTGSRDKPIDISQLTKRRLVDADGIINPSAFYIYLTAWVSNDP
VAYAASQANLRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFYLNGLRDTSDFVEAI
EKVRTICNNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLSISVVLACTFLVCAVFLLNPW
TAGIIVTVLALMTVELFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDK
NHRAVLALQHMFAPVLDGAVSTLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLL
PVLLSFFGPYPEVSPANGLNRLPTPSPEPPPSVVRFAVPPSHANNGSDSSDSEYSSQTTV
SGISEELRHYESQQGAGGPAHQVIVEATENPVFARSTVVHPEPRHHPPSNPRQQPHLDSG
SLPPGRPGQQPRREPPREGLRPPPYRPRRDAFEISTEGHSGPSNRDRTGPRGARSHNPRH
PAFTATGGSVPSYCQPITTVTASASVTVAVHPPPAPGPGPSQNPRGGPCPGYEDYPETDH
GLFEDPHVPFNVRCERRDSKVEVIELQDVECEERPRGHSSN
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatcctcagctcatgattcagactcccaaggaagaaggtgccaacatcctgacc
acagaagcgctccggcagcacctggactcggcgctccaggccagccgggtccacgtgtac
atgtacaacaggcagtggaaattggaacatttgtgttataaatctggcgaacttatcaca
gaaacaggttacatggatcagataatagaatatctttacccttgtttaattattacacct
ttggactgcttctgggaaggggcgaagttacaatctgggacagcgtacctactaggtaag
cctcctttgcagtggacaaactttgaccctttggaattcctggaagagttaaagaaaata
aactatcaagtggacagctgggaggaaatgctgaataaggctgaagttggtcatggttac
atggaccggccctgcctcaacccggctgacccagactgccctgccacagccccgaacaaa
aacgccaccaaacctcttgatatggcccttgttttgaatggtggatgtcatggcttatcc
agaaagtacatgcactggcaggaggagctgattgtgggtggcacggtgaagaacagcacg
gggaagctcgtcagtgcccacgccttgcagaccatgtttcagttaatgactcccaagcaa
atgtacgaacacttcaaggggtatgagtatgtctcgcacatcacctggaacgaggacaag
gctgcagccatcctggaggcctggcagaggacgtacgtggaggtggtccaccagagcgtc
gctcagaactccactcagaaggtgctttcctttaccacgacgaccctggacgacatcctc
aagtccttctccgacgtcagcgtcatccgcgtggccagcggctacttgctgatgcttgcc
tatgcctgtttaaccatgctgcgctgggactgctccaggtcccagggcgccgtggggctg
gcgggcgtcctgttggttgcactgtcagtggctgcaggattgggcctgtgctcgttgatc
gggatttcctttaacgctgcaacaactcaggttttgccatttcttgctcttggcgttggt
gtggacgatgttttccttctggcacacgcattcagtgaaacaggacagaataaaagaatc
ccttttgaggacaggaccggagagtgtctcaagcgcacgggggccagcgtggcgctcaca
tccatcagcaacgtcacagccttctttatggccgcgctgatcccgatccccgccctgcgg
gccttctccctccaggcggctgtagtagtggtgttcaattttgctatggttctgctcatt
tttcctgcaattctcagcatggatttgtatcgacgtgaggacaggagattggatattttc
tgctgcttcacaagcccctgtgtcagcagagtgattcaggttgaaccccaggcctacacg
gaggctcacgacagcacccgctacagccccccgcctccctacagcagccacagcttcgcc
cacgagacgcagatcaccatgcagtccacggtgcagctccgcacggagtacgacccgcac
acgcacgtgtactacaccaccgccgagccgcgctccgagatctccgtgcagcccgtcgcc
ctggcccaggacgccctcagctgccagagccccgagagcaccagctccaccagggacctg
ctctcccagttctccgactccagcctccactgcctcgagcccccctgcaccaagtggaca
ctctcatcttttgccgagaagcactacgctccattcctcttgaaaccaaaagccaaggtc
gtggtgatcttccttttcctgggcctgctcggggtcagcctgtacgggaccacccgagtg
cgcgacgggctggacctcacggacattgtgcctcgggaaaccagagagtacgacttcatt
gctgcacagttcaaatacttttctttctacaacatgtatatagtcactcagaaagcggac
tacccaaacatccagcacttactttacgaccttcataagagtttcagtgatgtgaagtat
gtcatgttggaagaaaacagacagctccccaagatgtggctgcactacttcagagactgg
ctccaaggacttcaggatgcatttgacagtgactgggagactgggaaaatcatgccaaac
aattacaaaaatggatcagacgatggggtccttgcctacaaactcctcgtgcaaaccggc
agccgcgataaacccatcgacatcagtcagctgaccaagcggcgcctggtggatgcagac
ggcatcattaaccccagcgctttctacatctacctgaccgcgtgggtcagcaacgacccc
gtggcttacgccgcctcgcaagccaacctccggcctcaccgtcctgagtgggtccacgac
aaagccgactacatgccagagaccaggctgagaatcccagcagcagagcccatcgaatac
gctcagttccctttctacctcaacggcttgcgggacacctcagacttcgtggaagcgatc
gaaaaagtccgcaccatctgcaacaactacacgagcctggggctctccagctaccccaac
ggctaccccttcctcttctgggagcagtacatcggcctccgccactggctcctgctgtcc
atcagcgtggtgctggcctgcacgttcctcgtgtgcgccgtcttccttctgaacccctgg
acggccgggatcattgtgacagtcttggctttgatgacagtcgagctctttggcatgatg
ggcctcattgggatcaagctgagcgccgtgcctgtggtcatcttgatcgcttccgtcggc
attggagtggaattcaccgttcacgtcgctctggccttcctaacagccattggcgacaag
aaccacagggcggtgctggccctccagcacatgtttgcgcccgttctggacggcgccgtc
tccacgctgctgggagtgctgatgctcgcagggtccgagttcgacttcattgtcaggtat
ttctttgccgtcctggcaatcctcacggtcctgggtgttctcaacggattggttctgctg
ccagtccttttgtccttcttcggaccctatcccgaggtgtctccagccaacgggctgaac
cggctgcccaccccttcccctgagccgccccccagcgtggtccggtttgctgtgcccccc
agtcacgcgaacaacgggtctgattcctccgactcggagtacagttctcagacgacagtg
tcgggcatcagcgaggagcttcggcactacgagagccagcagggagccgggggccctgcc
caccaagtgatcgtggaagccaccgaaaaccctgtcttcgcccgctccaccgtggtccat
cctgaaccgagacatcacccaccctcaaaccctcgacagcagccccacctggactcaggg
tccctgccacctggacggccaggccagcagccccgaagagaaccccccagagagggcctg
aggccgcccccttacagaccgcgcagagacgcttttgaaatttctactgaagggcattct
ggccctagcaatagggaccgcacgggcccccggggagcccgctctcacaaccctcggcac
ccagcgttcactgccacgggcggctccgtgcccagctactgccagcccatcaccaccgtg
acggcctcggcctccgtgactgttgctgtgcaccccccgcccgcccccgggcccgggccc
agccagaacccgcgaggggggccctgcccgggctacgaggactaccccgagactgaccac
gggctctttgaggacccccatgtgccttttaacgtacggtgcgagaggagggattccaag
gtggaggtcatagagctgcaggacgtggaatgtgaggagaggccccggggccacagctcc
aactga
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