Vicugna pacos (alpaca): 102525560
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Entry
102525560 CDS
T08098
Symbol
COL20A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102525560 (COL20A1)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Ig_DSCAM-DSCAML_C
Big_10
Motif
Other DBs
NCBI-GeneID:
102525560
NCBI-ProteinID:
XP_031543483
UniProt:
A0A6J3BCJ8
LinkDB
All DBs
Position
19
AA seq
1212 aa
AA seq
DB search
MSDCVHPSLGVSLWLLLGAAMGLGQGQASGRLKLVVLPEDRLQMTWRESEGRSLGFLVRV
KPMAGDPEQEVMLTTKTPKATVGGLSPSKGYSVQIFELTGSGNTLLARREFVIEDLKSNS
MSRSGRRPAGAALEPTPSHVGSLDLEPWLALAPSQDPPTPAGARFRCTPPMPADMIFLVD
GSWSIGHSHFQQVKDFLASVIEPFEIGLDKVQVGLTQYSGAPWTEWDLNTFGTKEKVLAA
VHSLRYRGGNTFTGLALTHVLEQNLQPAAGLRPEVVKLVILVTDGKSQDDARTAGHVLKG
LGVDVFAVGVKNADEAELRLLASPPLDITVHNVQDFPQLGTLAGLLSRLICQKIQGRSPR
RGSAATLALDPLSTPTSLVLTQVTSSSVHLSWTPAPQPPLKYLIVWQPSKGGTPREVVVE
GPALSTELHNLTSSTEYLVSVLPVYKAGVGEGLQGLVTTAPLPPPRALTLAAVTPRTIRL
AWQPSAGAAQYLVRCSPASPKGEEEAREVRVGQPGVLLDGLDPGRDYDIWVQSLRGAETS
EAQGIRARTPTLGAPRHLDFSDVSHDSARVSWEGIQRPVRLFRVSYVSSKGGHSGQTEVP
GNATWATLGPLSSSTTYTVRVTCLYPRGSSSTLTGHLTTRKVPSPSQLSVTELPGDKVRL
EWAAAAASGVLVYQIKWTPLGDGKAHEISVPGNLATAVLPGLGRRSECEIALLAYYRDGA
RSDPVSLRYSPLSQSPPSDLALASESPNSLRVSWTPPSSHVLHYRLTYTLASGSGPEKSV
SVPGPRSQVTLPDLLAATKYRVLVSAIYGAGESVAVSAVGRTAACPALHPDGSLPGFDLM
AAFGLVEKEYASIRGLAMEPSAFGPTRTFTLFKDAQLTRRASDIHPAALPPEHTVVFLLR
LLPETPREAFALWQVAAEDFQPVLGVLLDAGRKSLTYFNRDPRATLQEVTFDLPEVRRIF
FGSFHKVLEVPRRTTVRLYVDCRRWAERPIGEAGSLPAAGFVTLGRLAKPGDPRSSSASF
QLQLLQIVCSDSWAEEDRCCELPASKDGESCPAFPSACTCSLQTPGPPGPQGPPGLPGRN
GAPGEQGFPGPRGPPGVKGEKGDHGLPGLQGHPGLQGTPGKVGIQGPKGMRGLEGTSGLP
GPPGPRGLPGTAGARGSGGERGPPGAVGPTGLPGPKGERGEKGEPQSLATIYQLVGQACE
SAIQRWTLCCPK
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgagtgactgtgtgcacccctccctcggggtcagcctctggctgttgctgggggctgcc
atgggacttggccagggtcaagcgagcggccgcctgaagctggtggtgctgcctgaggac
cggctacagatgacgtggagggagtcggaggggcgcagcctcggcttcctggtgcgggtg
aagcccatggcaggggacccagagcaggaggtgatgctgacaaccaagacccccaaggcc
acggtggggggcctgagcccctccaaaggctacagcgtgcaaatcttcgagctcaccggc
tcagggaacaccctgctggctcggagggagtttgtgattgaagatttgaagagtaactcc
atgagcaggagcggcaggaggccagcgggggcagccctggagcccaccccctcccacgtg
gggagcctagacctggaaccctggttggccttggccccaagccaagatcctcccacccca
gctggtgcccggttccgctgcacaccccccatgcccgcggacatgatcttcctggtggat
gggtcctggagtatcggccacagtcacttccagcaggtcaaagacttcctggccagtgtc
atcgagccctttgaaatcgggctggacaaagtccaagtaggcctgactcagtacagcgga
gccccctggaccgagtgggacttgaacacctttggcaccaaggagaaggtcctggcggcc
gtccacagtctccgctacagagggggaaacacgttcacaggcctggccctgacccacgtg
ctggagcagaacctgcagcccgcagcaggtctccgtccagaggtggtcaagctggtgatt
ctggtgacggatggcaagtcccaggatgacgcccgcactgctggccacgtcctcaagggc
ctgggtgttgacgtctttgctgtgggtgtgaagaacgccgatgaggctgagctgaggctc
ctggcatccccgccgctggacatcactgtccacaatgtgcaggactttccccagctcggc
acgctggccggcctgctcagccggctgatctgccaaaaaatccagggcaggagcccgcgc
agggggtccgcagccactctggccctggaccccctttccactcccaccagcctggtcctg
acccaggtgacctcctccagcgtccacctgtcctggaccccagccccacagccacccctc
aagtatctgattgtgtggcagccttccaagggcggcacccccagggaggtggtggtggag
gggcccgccttgtccacagagctgcacaacctgacctccagcacagagtacctggtctcc
gtgctccctgtctacaaggccggagtcggcgagggcctgcagggcctggtgaccacagcg
cccctgcccccaccccgggcactgacccttgctgcagtgacgcccagaaccatccgcctc
gcctggcagccctcggctggggccgcccagtacctagtgcgctgctcgcctgcctccccc
aagggtgaggaggaggcaagagaggtgcgggtggggcagccgggggtgcttctggacggc
ctggacccgggcagggactatgacatctgggtgcagagcctgcgaggggcagagaccagt
gaggcccagggcatccgcgccaggactcccaccctgggcgccccaagacacctggacttc
tcggatgtgagccacgactcggcccgcgtgtcctgggaaggcatccagagacctgtgcgc
ctgttcagggtcagctatgtctccagcaagggtggccactcaggacagacggaggtccct
gggaacgccacctgggccactctgggcccgctctcctcctctaccacctacacagtccgc
gtcacctgcctctaccccaggggcagctcctccacactgaccggccacctgaccacacgg
aaagtccccagcccaagccagctgtcggtgaccgagctccctggggacaaagtccggctg
gagtgggcggccgcagcggcatctggcgtgctggtctaccagatcaagtggacgcccctg
ggagatgggaaggcccatgagatctctgtcccagggaacctggccacagccgtcctgcct
ggcctggggaggcgctcggagtgtgagatcgccctcctggcctactacagggacggggcc
cgcagcgaccctgtgtccctccgctacagccccctcagccagagcccgccctctgacctg
gccctggcctctgagtcgcccaacagcctgcgagtcagctggacgcccccgagcagccac
gtcctccactaccggctcacctacacactagcctcaggctcaggaccagagaaatcggtc
tccgttccaggacccaggagccaggtgacgcttcccgacctgctggcagccaccaagtac
agggtcctggtctcggccatctatggcgccggggagagtgtggcagtgtctgccgtgggc
cggacagcagcctgcccggccctccaccctgacggctccctcccaggctttgacctgatg
gcggccttcggcctagtggagaaggaatacgcctccatccgcggtctggccatggagccc
tcggcgtttggcccgaccaggaccttcacgctcttcaaggacgctcagctgactcgccgg
gccagtgacatccacccggccgccctccccccggagcacacggtggtcttccttctgcgc
ctgctccccgagacgccccgagaggccttcgcgttgtggcaggtggcggccgaggacttc
cagcccgtcctgggggtcctgctggatgccggcagaaagtcgctgacctacttcaaccgt
gaccccagggccaccttgcaggaggtcaccttcgacctgcccgaagtgagaagaatattc
tttgggagcttccacaaggtcctggaagttcccagaagaaccacagtcaggctctacgtg
gactgcagaaggtgggctgagaggcccatcggggaggccggcagcctgcccgctgccggc
ttcgtcacactggggaggctggccaagcccggggacccccggagcagctcggcctcgttc
cagctccagttgctgcagattgtgtgcagcgactcctgggcggaggaggacaggtgctgc
gagctcccagcttcgaaggatggagagtcctgccccgcctttccttctgcttgcacctgt
tccttgcagacccctgggcccccgggcccccagggacctccgggcctccccgggaggaat
ggagccccaggagagcagggcttcccagggcccaggggtccaccaggggtcaaaggagaa
aagggggaccatggactccccggcttgcagggccaccccggcctccagggcacccccggg
aaggttggcatccagggaccaaagggaatgagaggcctggaggggacatctggcctgcct
ggaccccctggccctaggggtctcccaggcacggcgggggccaggggcagcggtggggag
cgaggcccccctggggccgtggggcccacggggctgccggggcccaagggcgagcgagga
gagaagggcgagccacagtccctggccaccatctaccagctcgtgggccaggcctgcgag
tctgccatccagagatggaccctgtgctgtccgaagtga
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