KEGG   Vicugna pacos (alpaca): 102525836
Entry
102525836         CDS       T08098                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
vpc  Vicugna pacos (alpaca)
Pathway
vpc03420  Nucleotide excision repair
vpc04120  Ubiquitin mediated proteolysis
vpc05161  Hepatitis B
vpc05170  Human immunodeficiency virus 1 infection
vpc05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:vpc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102525836 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102525836 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    102525836 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    102525836 (DDB1)
   05161 Hepatitis B
    102525836 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vpc04121]
    102525836 (DDB1)
   03400 DNA repair and recombination proteins [BR:vpc03400]
    102525836 (DDB1)
Ubiquitin system [BR:vpc04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     102525836 (DDB1)
DNA repair and recombination proteins [BR:vpc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      102525836 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      102525836 (DDB1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd Beta_propel
Other DBs
NCBI-GeneID: 102525836
NCBI-ProteinID: XP_006214947
UniProt: A0A6I9IL39
LinkDB
Position
25
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSNQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARISKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcgcagaagcccaccgccgtgaatggctgcgtgacc
ggacactttacttcagctgaagacttgaacctgttgattgccaaaaatacaagattagag
atctatgtggtcactgccgaggggcttcggcccgtcaaagaggtgggcatgtatgggaag
attgctgtcatggaacttttcaggcccaagggggagagcaaggacctactgtttatcctg
acagctaagtacaatgcctgcattttggagtataaacagagtggcgagagcattgacatc
ataactcgagcccatggcaatgtccaggaccgtattggccgcccctcagagacaggcatt
attggcatcattgaccccgagtgccgaatgattggcctgcgactctatgatggccttttc
aaggttattccactagaccgggacaataaagagctcaaggcctttaacatccgcctggag
gagttgcatgttattgacgtcaagttcctatatggttgccaagcacctaccatctgcttt
gtctaccaggaccctcaggggcggcacgtgaaaacctatgaggtgtctctgcgcgagaag
gagttcaataagggcccttggaaacaggaaaatgtagaagcggaagcttccatggtgatt
gcagtcccagagccctttggaggcgccatcatcattggacaggaatcgatcacctatcac
aatggtgacaaatacctggcgattgcccctcctatcattaagcaaagcacaattgtgtgt
cacaatcgtgtggacccaaatggttcccgctatctgctgggagacatggaaggacggctc
ttcatgctgcttttggagaaggaggaacagatggatggcactgtcaccctcaaggatctc
cgtgtggaactccttggggagacctctattgctgagtgcttgacatacctcgataacggt
gttgtgtttgttgggtctcgccttggtgactcccagcttgtgaagctcaatgttgacagt
aatgaacaaggctcatatgtagtggccatggaaacctttaccaatttaggacccatcgtg
gacatgtgtgtggtggacctggagaggcaggggcagggacagctggtcacttgctctgga
gctttcaaggaaggttccttgcggatcatccggaatggaattggaatccacgagcatgcc
agcattgacttaccaggcatcaaaggtctctggccactgcggtccgatcctaaccgggag
actgatgacactttggtgctctcttttgtgggccagacaagagttctcatgttaaatgga
gaggaagtggaagaaactgaactgatgggttttgtggatgatcagcagactttcttctgt
ggcaacgtggctcatcaacaacttatccagattacttcagcatctgtgaggttggtctct
caagaaccgaaagctctggtcagtgaatggaaggagcctcagggcaagaacatcagtgtg
gcctcctgcaatagcaaccaggtagtggtagccgtgggaagggccctctactacctgcag
atccatccgcaggagctccgacagatcagccacacagagatggaacacgaagtggcctgc
ttggacatcaccccattaggggacagcaatggtctgtcccctctttgtgccattggcctc
tggacagacatctcggcccgtatctcgaagctgccctcttttgagctactgcacaaagag
atgctgggtggagagatcattcctcgttccatcctgatgaccacgtttgagagtagccac
tacctcctctgtgccttgggagatggggcacttttctactttgggctcaacattgagaca
ggcttgttgagcgaccgtaagaaggtgactctcggcacccagcccacggtattgaggacc
ttccgttctctttctaccaccaacgtctttgcttgctctgaccgccccactgtcatctac
agcagcaaccacaaattggtcttctccaatgtcaacctcaaggaagtgaactacatgtgt
cccctcaactcagatggctatcctgacagcctggcattggccaacaacagcactctcacc
attggcaccatcgacgagatccagaagctgcacattcgcacagttcccctctacgaatct
cccaggaagatctgctatcaggaggtgtcccagtgcttcggggtcctctccagccgtatt
gaggtccaggacacgagtgggggcaccactgctctgaggcccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagctgttctccagcagcacagcccctcacgagacc
tcctttggagaagaggtggaggtgcataacctccttatcattgaccagcacacctttgaa
gtgcttcatgcccaccagtttctgcagaacgagtatgcactcagcctggtctcctgcaag
ttgggcaaagaccccaacacgtacttcatcgtgggcacggccatggtgtatcccgaagag
gcagagcccaagcagggtcgtattgtggtctttcagtattcagacggaaaactgcagacg
gtggctgaaaaggaggtgaaaggagccgtgtactccatggtggaattcaatgggaagctg
ttagccagcatcaacagcacggtgcggctttatgagtggacgacagagaaggagcttcgc
actgagtgcaatcactacaacaacatcatggctctctacctgaagaccaagggcgacttc
atcctggtgggcgacctgatgcgctcggtgctactgctggcctataagcccatggagggc
aacttcgaagagattgctcgagactttaaccccaactggatgagtgctgtggaaatcttg
gatgatgacaatttcctgggggctgaaaatgcctttaacttgtttgtgtgtcagaaggat
agcgctgccaccactgacgaggagcggcagcaccttcaggaggtcgggctcttccatctg
ggcgaatttgtcaacgtcttttgccacggctctctggttatgcagaatctgggcgagacc
tccacccccacacagggctcggtgctcttcggcacggtcaacggcatgattggcctggtg
acctcgctgtcagagagctggtacaacctcttgttggacatgcagaatcgactcaataaa
gtcatcaaaagtgtgggcaagattgagcactccttctggagatcctttcatactgaacga
aagacagaaccagccacaggcttcatcgatggagacttgattgagagtttcctggatata
agcaggcccaagatgcaggaggttgtggcaaacctacagtatgacgacggcagcggaatg
aagcgggaggccaccgcagatgacctgatcaaggtggtggaggagttaacccggatccac
tag

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