Vicugna pacos (alpaca): 102526216
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Entry
102526216 CDS
T08098
Symbol
PNLDC1
Name
(RefSeq) LOW QUALITY PROTEIN: poly(A)-specific ribonuclease PNLDC1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102526216 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102526216 (PNLDC1)
Enzymes [BR:
vpc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102526216 (PNLDC1)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102526216 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
102526216
NCBI-ProteinID:
XP_006220603
UniProt:
A0A6I9IVV4
LinkDB
All DBs
Position
8
AA seq
525 aa
AA seq
DB search
MREVAVFCTPGLVFFASLAGLDIEFTGLRSNLSRPQQISLFDLPSEWYLKTRQSVQQFTI
CQIGLSVFSSIEGESSKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNRYGFDYNKFL
KKGIPYMNEEQEKTIKHSILTGNWRVCSSLHKDQIKVVIDEVTRWLDLAEEGDWMTLPDI
AGFQAFEVQLVLRKALPDIWTMLRDHGVIVKKVSKQHRWYLENTSCDRESCWKEKTLLSA
RGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPILIDTKN
VTKDIWKELNFPRVSSLSELHDILNSDLNPTKDSGPVIIHASKCEKYVETKYPHEAAYDA
FLCGSVFLRVAHLLLWRVHGSVPVPEPSFPLYLDVLAPYVNQVNLIRAGVPKINFSGPDY
PSIRPPILILSVRRWRGVSEQQVYREFQNLCKFDVRRLTQSQFLLLTNRFKDARSVLKEY
RGHPTLRVSLYRYWRHSPNINCLLQVCGVVTTWALVAFLLGRPHP
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgagggaggtggcagtgttctgtaccccgggacttgtcttttttgcctcccttgcaggt
ctggatatagaattcacaggccttcgttctaacctgtccaggccccagcagatcagtctt
tttgacttgccgtcagagtggtatctaaagactcgtcagagtgttcagcaattcacaatc
tgtcagataggattgtcagtgttctccagtattgaaggagagtcaagcaagtatgtagcc
cactcatgtaacttctttctcttccctacaacgtttgggattttggattcagagttctct
ttccaggcttccagcgttcagtttttgaatcggtatggcttcgactataacaagtttctc
aaaaaaggaatcccatatatgaacgaagaacaggagaagacaataaaacacagcatcctg
actgggaactggagagtttgcagttctctgcacaaagaccagatcaaagtggtgatcgat
gaggtgacacgctggctggacctggccgaggaaggcgactggatgaccctccctgatatc
gctggcttccaagccttcgaggtccagctcgtgctgaggaaggccctccccgacatctgg
acgatgctgagagatcatggggtgatagtgaagaaagtgagtaaacagcatcgctggtat
cttgagaacacctcatgtgatcgagagagctgttggaaggagaagactctcctctctgca
aggggtttctctgtgtttttccagatgctggtgaaagcccagaagcccttggtgggacat
aatatgatgatggatctgctacatctccacgagaagttcttcaggcctctcccagaaagc
tacgatgaattcaagctgaacatccacaatctatttcctattcttatcgacaccaagaat
gtgacaaaggacatctggaaggaactgaatttcccaagggtttcaagtctctcagagctt
cacgacatcctgaacagtgacttgaatcccacgaaggattctgggccagtgattattcac
gcaagcaaatgtgagaaatacgttgagacaaagtacccccatgaagcagcgtacgatgcc
ttcctctgcggatcagttttcttgagggtggcacacctgcttctatggagagtgcacggc
tctgtgcccgtgcccgagccctccttccctctctacctcgatgttctggcgccttatgtg
aaccaggtgaatcttatccgagccggggtccccaagatcaatttttctggtccagattac
cccagcatccgacctcccatcctcatcctgagtgtcaggaggtggcgtggggtcagcgag
cagcaagtctaccgcgagtttcagaatctctgcaaatttgacgtccggagactgacgcag
agccagttcctgctcctgaccaacaggtttaaggatgctcggagcgtcctgaaggagtac
aggggccacccgaccctgcgcgtctccctgtaccggtactggagacactccccgaacatc
aactgcttgttacaagtctgtggcgtggtcaccacctgggcccttgtcgcctttctcctt
ggaagacctcacccctga
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