Vicugna pacos (alpaca): 102526701
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Entry
102526701 CDS
T08098
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102526701 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102526701 (MTREX)
03041 Spliceosome [BR:
vpc03041
]
102526701 (MTREX)
03009 Ribosome biogenesis [BR:
vpc03009
]
102526701 (MTREX)
03016 Transfer RNA biogenesis [BR:
vpc03016
]
102526701 (MTREX)
Enzymes [BR:
vpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102526701 (MTREX)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102526701 (MTREX)
Spliceosome [BR:
vpc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102526701 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
102526701 (MTREX)
Ribosome biogenesis [BR:
vpc03009
]
Eukaryotic type
Pre-60S particles
Helicases
102526701 (MTREX)
Transfer RNA biogenesis [BR:
vpc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102526701 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
102526701
NCBI-ProteinID:
XP_006206060
UniProt:
A0A6I9I811
LinkDB
All DBs
Position
3
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTAAPGTKKDKEKEKGRWKGPSGSAEKAGKHFDGKLQSESTNIG
KTKRDADFEGTDEPFFGKKSRVEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagctcttcagcgtgttcgaggacgactcgaccgctgcg
cccggaaccaaaaaagacaaagaaaaggagaaagggaggtggaaggggccatcagggtct
gcggaaaaggctggaaaacactttgatggtaaactacaatctgagtcaactaacattgga
aaaaccaagagagatgcagacttcgagggcacagatgaacccttttttggaaagaaatcc
agggtagaagagtcagtaacggaagacttaagtttggcagacttgatgcccagggtcaag
gtacaatcagttgaaactgttgaggggtgtacacatgaggttgctcttcctgcagatgaa
gattatctaccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgaatatgccattgcactggccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggcattgagtaaccagaaataccgt
gaaatgtatgaagagtttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctatacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtcgtatgggaagaaactattattttgcttcctgataatgttcactatgtc
tttctttcggctaccattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgccatgtaatttacacagattatcggcctactccattgcagcactacatt
tttccagcagggggagatggtctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcgatgcaagtacttcgggatgctggtgatttggcaaaaggagat
caaaaggggcggaaaggaggaacaaaaggaccatcaaatgtattcaagattgtgaagatg
attatggaaagaaattttcagcctgtaattattttcagtttcagtaagaaagattgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagagaagaagatggtt
gaagaagtattcagtaacgcaattgattgcttatctgatgaagataaaaagctcccgcag
gttgaacatgttcttcctctcttgaagcggggcattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagactttcgctatgggaattaacatgccagctagaactgttttattcacgaat
gcccgaaaatttgatggaaaggattttcgatggatttcctctggtgaatacattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattctcatggtagat
gaaaagatgagcccaacaattgggaaacaactgcttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactacgagtagaagaaattaat
cctgaatacatgttggaaaaatccttctatcagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcggaagaacagtataataaaatagtaataccaaatgaa
gaaagtgtagtcatctattataagattagacaacagcttgctaaattgggtaaagaaatt
gaagaatatattcacaaaccaaaatactgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggtgtagtggtgaatttctcaaaaaaa
tcaaatgttaagcctaattctggtgaactggaccctctatatgtagtagaagtactcctg
cgctgtagcaaagagagcttgaaaaattcagctactgaggctgcaaagcccgctaaacct
gacgagaaaggagagatgcaggttgttccagttttggtgcatcttctgtctgctatcagc
agtgttaggctttacattcctaaagaccttcgaccactggacaatagacagagtgtctta
aaatcaatacaggaagttcagaagcgttttcctgatggtgttcctttattagatcctatt
gatgacatgggcattcaagatcaagggctgaaaaaagtcatccagaaagtagaggctttt
gagcatcgaatgtattctcacccacttcataatgatccaaatttggaaactgtgtatact
ctttgtgaaaaaaaagcacagattgctatagatattaaatctgcaaagcgagaactaaag
aaagcaagaactgtcttacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacatcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgaacttcttctaactgagatgatgtttaatggccttttcaatgaccta
tctgcagaacaggcaacagcactactaagctgctttgtgtttcaagagaattctagtgag
atgccaaaattaacagagcagttagccggaccacttcgtcaaatgcaggaatgtgctaaa
agaatagcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctgagc
tcatttaaacctcacttaatggatgtggtatatacttgggcgactggagctacatttgcc
catatctgcaaaatgacggatgtttttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aataaatttgcagaaggaatcaccaaaatcaagagagacattgtgtttgctgccagcctc
tacttatag
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