Vicugna pacos (alpaca): 102526997
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Entry
102526997 CDS
T08098
Symbol
PABPC5
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03015
mRNA surveillance pathway
vpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102526997 (PABPC5)
09123 Folding, sorting and degradation
03018 RNA degradation
102526997 (PABPC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102526997 (PABPC5)
03041 Spliceosome [BR:
vpc03041
]
102526997 (PABPC5)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102526997 (PABPC5)
mRNA cycle factors
Stress granule specific factors
102526997 (PABPC5)
Spliceosome [BR:
vpc03041
]
Complex C
Other components
Complex C specific factors
102526997 (PABPC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_7
RRM_10
RRM_3
TC1
Motif
Other DBs
NCBI-GeneID:
102526997
NCBI-ProteinID:
XP_006214448
UniProt:
A0A6I9IJ78
LinkDB
All DBs
Position
Unknown
AA seq
382 aa
AA seq
DB search
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDRATFTNVFVKNFGDDVDDDKLKEIFSEYGPTESVKVIRDASGKSKG
FGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPVYIKNLDETIDDEKLKEEFSPFGSISRAKVMVEVGQGKGFGVVCFSSFDEATKAVDE
MNGRIVGSKPLHVTLGQARRRW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggggagtggggagcctaatcctgccggcaagaaaaagaagtacctcaaggctgccctg
tacgtgggtgacttggacccagatgtcaccgaggacatgttatataaaaagttcaggccc
gctggccctctgcgcttcacccgaatctgccgtgacccggtgacccgcagccccctgggc
tatggctatgttaacttccgctttcctgcggatgctgagtgggcccttaacaccatgaat
tttgatttgatcaacggcaaaccattccgcctgatgtggtctcagccagatgaccgctta
agaaagtctggcgtgggaaacatattcatcaaaaacctggacaaatccatagacaatagg
gccctgttttacttattttctgcttttggtaacattctatcctgcaaagtcgtgtgcgat
gacaatggctctaagggttatgcttatgtgcactttgacagcctggcagctgccaatcgg
gccatctggcacatgaacggggtgcggctcaacaaccgccaggtctatgttggccgattc
aaatttcccgaagagcgggcggctgaagttagaactagggatagagcaactttcaccaat
gttttcgttaaaaactttggcgatgatgtggatgacgacaaactgaaggaaattttcagt
gagtatgggcccacggagagcgttaaggtgataagagatgccagtgggaaatctaaaggc
tttggctttgtgagatacgagacacacgaggctgctcagaaggctgtgttagacctgcat
ggcaagtccatcgatgggaaagtcctctacgtggggcgagcacagaagaaaattgaacgt
ctggctgagttaaggcgaagattcgagcggctgagattaaaagaaaaaagtcggcctcca
ggggtgcccgtctatattaagaacctggatgagaccatcgatgatgaaaaactgaaagag
gaattttctccctttggatccattagccgggccaaagtgatggtggaagtggggcagggc
aaagggtttggtgtcgtctgcttctcctcttttgacgaagctaccaaagcagtagatgag
atgaatggtcgcatagtgggctccaagcccctgcatgtcaccctgggccaggccaggcgc
aggtggtga
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