Vicugna pacos (alpaca): 102527270
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Entry
102527270 CDS
T08098
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpc03021
]
102527270 (SCAF4)
03041 Spliceosome [BR:
vpc03041
]
102527270 (SCAF4)
Transcription machinery [BR:
vpc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102527270 (SCAF4)
Spliceosome [BR:
vpc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
102527270 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102527270
NCBI-ProteinID:
XP_015104828
UniProt:
A0A6J0AZK3
LinkDB
All DBs
Position
1
AA seq
1147 aa
AA seq
DB search
MDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSR
HQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDM
AAGTSNAAPIAENVTNNEGSPPPPVKVASELPQATTNSVPTVPQLPSSDAFAAVAQLFQT
TQGQQLQQILQTFQQPPKPQSPAIDNAVMAQVQAITAQLKTAPTQPPEQKAAFPPPEQKT
AFDKKLLDRFDYDDEPEAVEESKKEDAAAAAAAAAAAAAAAAAAAAAAAATATATSAATA
PPAAAAPPAPAAAVPSAAPAAASPPQAPFGFPGDGMQQPAYTQHQNMDQFQPRMMPIQQD
PVHHQVPLPPNGQVPGFGLLPTPPFPPMAQSVIPPTPPVQQPFQSSFQTQNEPLSQKTHQ
EMEVEQPCIQEVKRHIPDNRKSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRDRRRH
SPRSRSQERRDREKERERRQKGLPQIKSETASVCSTTLWVGQLDKRTTQQDVASLLEEFG
PIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQY
WDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNPDWKGIPKKHENEVAQNGGAETSHT
EPVSPIPKPLPVPVPPIPVPAPITVPPPQVPPHQPGPPVVGTLQPPTFTPPLGIPPPGFG
PGVPPPPPPPPFLRPGFNPMHLPPGFLPPGPPPPITPPVSIPPPHTPPISIPNSTIAGIN
EDTTKDLSIGNPIPTVVSGARGNAESGDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQ
GVAPGPVIGLQAPSTGLLGARPGLIPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPP
GPGGFGMPPPHGMKGPFPPHGPFVRPGGMPGLGAPGPGPGAPEDRDGRQPQPQPQPQPQQ
PPPTQQPPPTQQPPPTQQQPQPFRNDNRQQFNAGRDQERFGRRSFGSRVENDRERYGNRN
DDRDNCNRERREWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEENRGKEK
PEVADRASGNKAAEPPLSQVGTVDTVSELGKGESESAVVRPSEELPAEATSSVEPDKDSG
SAAEAPR
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaagcctcccatctctcgagccaagatgattctcatcacgaaagctgctatt
aaagctattaagctttataagcatgtagttcaaatagtagaaaagttcatcaaaaagtgt
aaaccagagtacaaggttccgggattgtatgtaatcgactcaattgtgcgacagtctcgt
catcagtttggaactgataaagatgtttttgggccaagattctctaaaaacataactgcc
acattccaatatttatatctttgtccatctgaagataagagtaaaatagttcgtgtgctg
aacctttggcagaaaaatggggtattcaaaattgaaattattcagcctcttttggacatg
gcagcaggaaccagtaatgcagccccaatagcagaaaatgttactaataatgaaggttca
cctccgcctccagtcaaggttgcttctgaacttccacaggccactacaaactctgtacca
actgtaccacagttacccagctctgatgcttttgctgctgtggcccagctgtttcagaca
actcaaggtcaacagcttcagcagatccttcagacttttcaacagcctccaaaaccacag
tctcccgccattgacaatgctgtgatggctcaggttcaggctatcacagctcagttaaag
acagctcctacacaaccacctgagcaaaaagctgctttccccccacctgagcaaaaaact
gcatttgacaagaagctacttgacagatttgattacgatgatgagccagaagctgtggag
gaatcaaagaaagaagatgctgctgccgctgccgccgccgccgccgccgccgccgccgcc
gccgctgctgctgctgccgccgccgctgccactgccactgccaccagtgccgccacggca
cctcctgctgctgccgcacccccagctcctgctgctgccgtgccttctgctgccccggct
gcggcttctcctccacaggccccctttggatttcctggagatggcatgcagcaaccggca
tatacccagcatcaaaacatggatcagtttcaacctcgaatgatgccaatacagcaggat
ccagtgcatcatcaggttccacttcctcctaatggacaggtgccaggatttggccttctt
cctacacctccatttcctcccatggctcagtccgtgattcctccaactccacctgtgcag
cagcctttccaaagttcctttcagacacaaaatgaaccactttcacaaaagacacatcag
gaaatggaagtagagcagccttgtattcaagaagtgaagcggcacatacctgataacaga
aaatcaagatctagatcagcatccaggtcaccaaaaaggagacgatctcgatctggttct
agatctcgaaggtctcgtcatcgacgttctcgatctcgatccagagatagacgccgacat
tctcctcgatctcgatcccaagaaagacgagatcgagaaaaagaaagagaacgccgacaa
aaaggccttcctcaaatcaaatcagaaactgctagtgtttgtagtactacactctgggtg
ggacaactggacaaaaggactactcagcaagatgttgccagtctcttagaagagtttggg
ccaattgaatcaattaatatgattcctcccagaggttgtgcctatattgttatggttcat
aggcaagatgcttatcgtgccctgcagaaactgagccgaggaaactataaagtgaaccag
aaatccataaagattgcctgggccttaaacaaaggaataaaggcagattataagcagtat
tgggatgtagaacttggtgttacttatattccatgggacaaagtcaagcctgaagaactg
gagagtttttgtgaaggaggaatgttggacagtgatacacttaatccagattggaaggga
attcccaagaagcatgaaaatgaagttgctcaaaatggaggggcagaaacctcacacaca
gaaccagtgtcacccatccctaagcctttacctgtgcctgtccctcccattcctgttccc
gcacctataacagtaccacctccacaggtcccaccacatcagccaggacctcctgtagtt
ggtactctccagccacctactttcacacctcctttgggaattccgcctcccggctttggt
cctggtgttcctcctcctccacctcctccaccgtttttgcgcccaggattcaacccaatg
catttaccaccaggttttcttcctcctggacccccacctcctataactccaccagtatcc
attcctcctcctcacactccaccaataagcatcccaaactctactatcgctggtataaat
gaagacactacaaaagacttatctattggaaatcccattccaacagtggtgtctggggct
agaggaaatgccgagtctggtgacagtgtgaaaatgtatggctctgctgtgccacctgct
gcacccacgaatctgcccacccctcctgtaacccagcctgtttcacttcttggtactcaa
ggagttgcacctggtcctgtaattgggctccaagccccatccactggtcttcttggtgcc
cgacctggcctaatcccactccagcgcccgccaggaatgcctccaccccatttacagcga
tttcctctgatgccacctcgtcccatgccacctcacatgatgcacagaggtccgccacca
ggcccagggggctttggaatgcctccgcctcacggaatgaaaggcccctttccgccccat
ggcccctttgttcggcctggtggaatgccggggctcggggccccaggaccaggcccaggc
gctcctgaagacagagacggaaggcagccgcagccgcagccgcagccgcagccgcagcag
ccgccaccgactcagcagccgccaccgactcagcagccgccaccgactcagcagcagcca
cagccgtttagaaacgataacaggcagcagttcaatgcaggtagagaccaagaaaggttt
ggaagaagatctttcggaagtagggtggagaatgaccgggaacggtatgggaaccgtaat
gatgatagagataattgtaatcgtgaaaggagagagtggggaagaaggagccctgaccgg
gacaggcaccgagacttggaagagaggaatagacgctctagtgggcaccgagacagagag
agagattctagagatagagagtctcgtagggagaaggaagaaaaccgagggaaggaaaag
cctgaggtggcagacagggccagtgggaacaaagccgctgaacctccccttagccaagtg
ggaaccgtagacactgtttcagaacttggcaagggcgagtccgagtctgcagtcgtaaga
ccttctgaagagttgcctgctgaggctacctcatccgttgaacctgacaaggattccggc
tcagcagcagaggctcctcgttag
DBGET
integrated database retrieval system
