Vicugna pacos (alpaca): 102527748
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Entry
102527748 CDS
T08098
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102527748 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpc04147
]
102527748 (COL18A1)
00535 Proteoglycans [BR:
vpc00535
]
102527748 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
vpc00536
]
102527748 (COL18A1)
Exosome [BR:
vpc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102527748 (COL18A1)
Proteoglycans [BR:
vpc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102527748 (COL18A1)
Glycosaminoglycan binding proteins [BR:
vpc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102527748 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
102527748
NCBI-ProteinID:
XP_031535848
UniProt:
A0A6J3AQP5
LinkDB
All DBs
Position
1
AA seq
1297 aa
AA seq
DB search
MAPDPSGWRGPWGLLLLICCLAAARADLIGWLWPVKSAEPTAALASVPPGSSPVLPTEDT
TTHVAPQDGPAEQGTAPASPELPLEMLEAGQAWTPPAPTAPTVSPDAKGNNIAGVGAEIL
SVAQGIRSFVQLWGDTAPTERSSSVGTPALAMPTEPLTTPGLPSAPDLLYPTCGSEPVRE
SAGLKAAVSSAAPGWTQVVGSRRVPAGAAGEQDGLALSVDGAHAALFVDCELVQREPLAR
SLRGLQLEPGARVFVAQAGGADPESFQGLISELRVRGDPQVSPLHCPEDGDDRDDADDGV
SGDFGSGLEGTRQRLGEEAGVPLEPRLPEAPPVTSPPLAGVGSEEDTRTDEIEEEATASW
LGAQTLPSSGAVTTWDRSVWSPGGSLEERGLKGQKGEPGAQGLPGPAGPQGPAGPVVQSP
DAQPVPGPQGPPGPPGPPGKDGAPGRDGEPGDPGEDGRPGDTGPQGFPGTPGDVGPKGEK
GDPGVGPRGPPGPQGPPGPPGPSFRYDKLTFVDMEGSGFGGDPESLRGPRGFPGPPGPPG
VPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGPPGPPGPPGPPGPPGKEGQPGETGQKGN
LGEVGAPGPKGSKGDPGPIGAPGEHGLAGAPGPAGPPGPPGPPGPPGPGLAAGFDDMEGS
GGPFWSTARGADGPQGPPGLPGVKGDPGATGPPGTKGEVGADGAPGLPGREGAAGAQGPK
GEKGTQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDRAVASVSGPEGRTGLAGFPVP
AGPKGDLGSRGQQGPPGPKGEKGEPGMVFSPDGRATSLAQKGAKGEPGFRGPPGPYGRPG
HKGEIGFPGRPGRPGMNGLKGEKGEPGDASVGFGVRGPPGPPGPPGPPGPPGTPVYDSNA
FVESGRPGPPGLPGERGPPGPKGDRGEVGPPGPPGQFPLDLLPLGAEWKGEKGDRGVAGQ
KGERAFPGPPARRAPGPPGSMGASSGQVRVWATYQTMLDKVPEVPEGWLIFVAEREELYV
RVRNGFRKVLLGARTPLPRGTDNEVAALQPPVVQLHEGNPYPRRELPHPTARPWWADDTL
AKPPRLPDPQPYPGAPHHGSYMHRQPAHPTGSPTHTHQDFQPVLHLVAXXXXXXXXXXXX
RGADFQCFQQARAVGLAGTYRAFLSSRLQDLYSVVRRADRAAVPIVNLRDEALFPSWEAL
FSGSGGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTESYCETWRTEARTAT
GQASSLLAGRLLEQKAAGCHNAFVVLCIENSFMTSSK
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcggctggcgcggcccctggggtctgctgctgctcatctgctgc
ctcgcggccgcccgggctgacctgataggatggttgtggcccgttaagtctgctgagccc
acggctgcactggcctctgtgccccctggcagctcgcctgtgctgcccacagaggacacc
accacgcacgtggccccccaggatggccccgccgagcaagggacagcccctgccagccct
gagctgcctctggagatgctggaggcgggccaggcctggacccccccagcccccacagcc
cccaccgtgagcccggacgcaaaggggaacaacattgctggcgttggagccgagatcctg
agcgtggcccagggcatccggagcttcgtccagctgtggggcgacaccgcccccaccgag
cgctccagcagcgtagggacgcccgctctggcgatgcccacagaacccctcaccacccct
ggacttcccagtgcccccgatctgctgtaccccacctgcggcagcgagccggtgcgcgag
agcgcggggctcaaggcagccgtatccagcgcggcgcctggatggacgcaggttgtgggg
agccgccgagtccctgccggcgctgcaggggagcaggacggcctggcactcagcgtggac
ggcgcgcacgccgctctcttcgtggactgcgagctggtccagcgcgagcccctggcgcgc
tccctgcgcggcctgcagctggagcccggtgcccgcgtcttcgtggctcaggctggcgga
gcggaccccgaaagttttcaggggctgatctcagagctgcgggtgcgcggagacccccag
gtgagccccttgcactgcccggaggacggggacgaccgggacgacgcggacgacggggtg
tccggagacttcggcagcgggctcgaggggacccggcagcgtcttggggaggaggcgggc
gtgcccctggaacccaggctccccgaggctcccccggtcacttctccacccttggctgga
gttggcagcgaggaagacaccagaactgacgaaatcgaggaggaagccacggcgtcttgg
ttaggagctcagacgcttcccagctcaggcgccgtcaccacgtgggacaggagcgtgtgg
agccctgggggcagcctggaagagcgaggcctgaagggtcagaagggggagccaggcgct
cagggtctgcccggcccggcgggtccccagggtcctgcgggaccagtggtgcagagccct
gacgcacagcctgttcccgggccccagggaccccctggacccccaggaccaccggggaaa
gatggcgcccctggaagggatggcgagcctggagaccccggcgaagatgggaggcccgga
gacactgggccgcagggcttcccgggaaccccaggggacgtgggccccaagggtgagaag
ggggatcctggggtcgggccaaggggacccccaggaccccaagggcctccagggccaccg
ggaccctccttcagatacgacaagctgaccttcgttgacatggaggggtccggctttggt
ggcgacccggagagcctccgcggccctcgaggcttccccggcccccctgggccccctggc
gtcccaggcctgcccggagagccaggccgcttcgggatgaacagttcggatgtccccgga
cccgcaggccttcctggagtgcctgggcgagatgggccccccgggcctcctgggcccccg
gggcccccaggtcctccaggaaaagaggggcaaccaggcgagaccggccagaaaggcaac
ctgggcgaggtgggcgccccaggacccaagggaagtaagggagaccctgggcccatcggc
gctccaggggagcacggcctggcgggagccccaggaccagcaggacctccagggcccccg
ggcccccccgggccgccaggaccaggactcgccgcaggatttgacgacatggaaggctcc
gggggacccttctggtcgacagcccgaggcgctgacgggccgcagggaccgcccggcctg
cccggagtcaagggggatcctggagccacagggccaccagggaccaagggagaagttgga
gcagacggagctcccggcctccctggcagagagggcgcggctggagcccaggggcccaaa
ggagaaaaagggacccagggagagaaaggcgacccagggaaggatggagtgggacagcca
ggcctccccggcccccccgggccccctgggcctgtcgtctacgtgtcggagcaggatagg
gcggtggcgagcgtgtcgggccccgagggccgcacggggcttgcaggctttcccgtacct
gccgggccaaagggagacctgggctccagaggccagcagggccccccggggcccaagggt
gagaagggtgagccgggcatggtcttcagccccgacgggagagcaacgtccctggcccag
aagggagcgaagggtgagcccggctttcgaggacccccgggcccatatgggcggccgggg
cacaagggagagattggcttccctggacggccgggtcgccccgggatgaacggattgaaa
ggggagaagggggagccgggagatgccagcgtgggattcggcgtgaggggtccgcctggc
ccacctgggcccccagggcccccgggcccccccgggactcctgtctatgacagcaacgca
ttcgtggagtctggccgccctggacccccaggattgccaggtgagaggggcccccctgga
ccgaagggtgacagaggagaagtgggccctcccggacccccagggcagttcccgctggac
ctgctgccgctgggcgctgagtggaagggggagaagggtgaccgcggggtcgccggacag
aaaggggagagagcgttcccgggccccccggcccgccgggcccccggccccccgggctcc
atgggcgcctcctctgggcaggtgagggtctgggccacgtaccagaccatgctggacaag
gtgcccgaggtgccggagggctggctcatctttgtggctgagagggaggagctgtacgtc
cgggtccggaatggcttccggaaggttctgctgggggcccgcacgcccctcccgcgtggg
acggacaacgaggtggccgccttgcagcccccagtggtgcagctgcatgagggcaacccg
tacccccgccgggagctccctcacccgacggcgcggccttggtgggcagacgacacccta
gccaagcccccgcgcctgccggacccgcagccctaccccggagccccgcaccacggctcc
tacatgcaccgccagccggcacaccccacaggctcgcccacccacacccaccaggacttc
cagccagtgctccacctggtcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
cgcggggccgacttccagtgcttccagcaggcgcgtgctgtggggctggccggcacctac
cgcgccttcctgtcctcgcggctgcaggacctctacagcgtcgtgcgccgcgccgaccgc
gcagccgtgcccatcgtcaacctcagggacgaggcgctgtttcccagctgggaggccttg
ttctcgggctccgggggccagctgaagccaggcgcccgcatcttctcttttgacggccga
gacgtcctgcagcaccccgcctggccccagaagagcgtgtggcatggctcggaccccagc
gggcgccggctgaccgagagctactgcgagacgtggcggaccgaggccaggacggccacc
ggccaggcctcctcgctgctggcgggccggctgctggagcagaaggccgcgggctgccac
aacgccttcgtcgtcctctgcatcgagaacagcttcatgacctcctccaagtag
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