Vicugna pacos (alpaca): 102529451
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Entry
102529451 CDS
T08098
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102529451 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102529451 (PATL1)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102529451 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
102529451 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
102529451
NCBI-ProteinID:
XP_006214961
UniProt:
A0ABM5DYY5
LinkDB
All DBs
Position
25
AA seq
695 aa
AA seq
DB search
MDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRI
RGPLLAQEMPTVSILEYALPQRPAQGPEDDRDLSERALPRRSTSPVIGSPPVRAVPIGTP
PKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPASVP
PVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGF
RAFFSAPPPATPPPPQHPPGPGPHLQNLRAQAPMFRPDTTHLHPQHRRLLHQRQQQNRNQ
HRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQN
YFEKLEKLSAAEEVQGDGPKKERTKLITPQVARLEHAYKPVQFEGSLGKLTVSSVNNPRK
MIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALT
DERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMT
TARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLMNLPQSAAAPAPSNPH
LTAVLQNKFGLSLLLVVLSRGEDLQSSDPTTESTQSNQWTEVMFMATRELLRIPQAALAK
PISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggacttgttgggtgaccatgaggagaatctggcagaaaggctcagtaagatggtgatc
gaaaatgaactagaagatccagctatcatgagggcagtgcagaccaggccagtgttgcaa
ccccaaccaggaagtctcaattccagcatctgggatggatctgaagttctgaggcgaatc
cgaggaccactgcttgctcaggaaatgcctacagtgtctatattagaatatgccttgcct
cagaggcctgcacagggcccagaagatgatcgggacctttctgagcgtgcgttaccgagg
cggtccacgtcgcctgtcattgggagtcctcctgttagagctgtccccataggcacccca
cctaagcagatggctgtacccagcttcaaccagcagattctgtgtccgaaacctgtccat
gttcggcccccgatgccaccgcggtatcctgctccctatggtgagaggatgtctccgaac
cagctctgcagtgtcccgaattcttccctactgggtcaccctttccccgctagtgttcct
cctgttctcagtcccctccagagagcacagcttcttggaggagcacagctacagcctgga
cgaatgtctcccagccagtttgcacgggtccctggatttgttggcagtccgctggctgcc
atgaatcccaagctgctgcaagggcgagttgggcagatgcttcccccagcaccaggcttc
cgtgccttcttcagtgctccaccccctgctacaccgcctcctccgcagcacccccctggc
ccaggacctcacctgcaaaacctgagagctcaggccccaatgtttagaccagacacaact
caccttcatccacagcaccgtcgactcttacatcagagacagcaacagaacagaaatcag
catcggaatctcaatggtgcgggagacagaggaagtcaccggagcagccatcaggatcat
ctccggaaggatccatatgccaatctcatgttgcagcgagagaaggattgggtctctaaa
atccaaatgatgcaactgcaaagcactgatccctacctggatgacttttattaccagaat
tactttgaaaaactggagaaactgtcagctgctgaagaagtgcaaggcgatggccctaaa
aaggagcgcaccaagctcattacccctcaggtggccagactggagcacgcctataagcca
gtgcagtttgagggctctttgggaaagcttactgtctctagtgtgaataacccccgaaaa
atgattgatgctgttgtgacatctcggagtgaggatgatgagacaaaagaaaaacaggtt
cgggacaaaagacgaaaaacccttgtcataattgagaaaacctatagtctcctcctcgac
gtggaggattatgaaaggcgttacctcctaagtctggaagaagagcgacctgctctgacg
gatgaaagaaagcacaaaatttgtagcatgtatgacaacttaagagggaaattgcctgga
caagagaggccgagtgatgaccactttgtacagatcatgtgtatccgaaaagggaagagg
atggttgcccgtattcttcctttcctctccacagagcaagcagctgacattctcatgaca
acagccaggaacctccctttccttatcaagaaagatgcacaagacgaggtgctgccatgc
ttattgagtcccttctccctcctcctctatcatcttccgtcagtgaccgtcaccagcctt
ctgcaacagctaatgaacctacctcagagtgcagctgcaccagcgccctccaatcctcac
ctcactgctgtgctccagaacaagttcggcctgtcgctgctccttgtcgtcctgagccgc
ggggaagacctgcagagttcagaccccacgacagaatcaacgcagagcaaccagtggacg
gaggtgatgttcatggcaacccgagaacttctgcggattccccaggcagccctggccaag
ccaatctctatccccacaaacctagtgtccctcttctctcgttatgttgaccgacagaaa
ctgaacttgctggagacaaaactgcagctagttcaggggatacgataa
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