Vicugna pacos (alpaca): 102532005
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Entry
102532005 CDS
T08098
Symbol
RBM39
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102532005 (RBM39)
Spliceosome [BR:
vpc03041
]
Common components
Common spliceosomal components
General mRNP proteins
102532005 (RBM39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
IHO1
Motif
Other DBs
NCBI-GeneID:
102532005
NCBI-ProteinID:
XP_006202645
UniProt:
A0A6I9I674
LinkDB
All DBs
Position
19
AA seq
530 aa
AA seq
DB search
MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP
LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatattgatattgaagcaatgcttgaggctccttacaagaaggatgagaac
aagttgagcagtgctaacggccatgaagaacgtagcaaaaagaggaaaaaaagcaagagc
agaagtcgtagtcatgaacgaaaaagaagcaaaagtaaggaacggaagcgaagtagagac
agagaaaggaaaaagagcaaaagccgagaaaggaagcgaagtagaagcaaagaaaggaga
cggagtcgttcaagaagtcgagatcggagattcagaggccgctacagaagtccttactcc
ggaccaaaatttaacagtgccatccgaggaaagattgggttgcctcatagcatcaaatta
agcagacgacgttcccgaagcaaaagtccattcagaaaagacaagagtcctgtgagggaa
cctattgataacctaactcctgaggaaagagatgcaaggactgttttctgcatgcagctg
gcagcaagaattcgcccgagggatttggaagagtttttctctacagtaggaaaggttcga
gatgtgaggatgatttctgacagaaattcaagacgttctaaaggaattgcttatgtggag
tttgttgatgttagctcagtgcctctagcaataggattaactggccagcgtgttttagga
gtgccaatcattgtacaggcatcacaggccgagaagaacagagctgcagcaatggcaaac
aatctacaaaagggaagtgctggacctatgaggctttatgtgggctcgttacattttaac
ataactgaagatatgcttcgggggatctttgagccttttggaaggattgaaagtatccag
ctcatgatggatagtgaaacaggtcgatccaagggatatggatttattacgttttctgat
tcagaatgtgccaagaaagctttggaacagctaaatggatttgagctagcaggaaggcca
atgaaggttggtcatgttactgaacgtactgatgcttccagcgctagctcatttttggac
agtgatgaactagaaaggactggaattgacttgggaacaactggtcgtctccaattaatg
gcaagactcgcagagggtacaggtttgcagatcccaccggcagcacagcaagctttgcaa
atgagtggctctttggcatttggtgctgtggcagaattctcttttgttatagatttgcaa
acaagactttcccaacagactgaagcttcagcattagctgcagctgcctctgttcaacct
cttgcaacacagtgtttccagctgtctaacatgtttaaccctcaaacagaagaagaagtt
ggatgggatacggagattaaagatgatgtgattgaagaatgtaataaacatggaggagtt
attcatatttatgttgacaaaaattcagctcagggcaatgtgtatgtgaagtgcccatca
attgctgcagctattgctgctgtcaatgcattgcatggcaggtggtttgctggtaaaatg
ataacagcagcatatgtacctcttccaacttatcacaacctctttcctgactctatgaca
gcaacacaactactggttccaagtagacgatga
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