Vicugna pacos (alpaca): 102533351
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Entry
102533351 CDS
T08098
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X2
KO
K10864
DNA mismatch repair protein PMS1
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpc03400
]
102533351 (PMS1)
DNA repair and recombination proteins [BR:
vpc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
102533351 (PMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HIRA_B
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
102533351
NCBI-ProteinID:
XP_015099668
LinkDB
All DBs
Position
5
AA seq
933 aa
AA seq
DB search
MKQLPAATVRLLSSSQVITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEG
IKAVDAPVMAIKYYTSKLNSHEDLETLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQ
YVLDGSGYIISQKPSHLGQGTTVTVLRLFKNLPVRKQFYSTAKKCKDEIKKVQDLLISYG
IIKPDVRIVFVHNKAIIWQKTRVSDHKMALMSVLGTAVMGNMEFIQYHSEKSQIYLSGFF
PKHDADHSLTSLSTPERSFIFINNRPVHQKDILKLIRHHYNLKCLKESTRLYPIFFLKID
VPTADVDVNLTPDKSQVLLQNKESVLIALENLMTTCYGSPPSTNSYESNKTDVSLVDMVV
SKTTETDVLFTRMETSGNNYPNVDTSAAVPFQNDVHNDKSEKNTNYCLNQQIPLGDHYDD
HFSSENSRIDKNARNTFQEIPMNNLSCEDTQKEYNETCFLGSVKHAQSENSNKGHIDESG
ENEEAVPEESLEICADDWSKGNVLKNSEGENIEPVKILVPQESLPCKVGNNNHHHSDPEQ
KNLNEGSCSKKSNVVDNKSGQLTAYDLISSRVIKKPMSASALFVQDHRAQFFTENSEAGL
ENATVQTEELWKTLSEEEKLKYEEKAAKDLERYNRQVKRAIEQESQVLKDGKKRIKPTSA
WNLAQKHKLKTSLSNQPKLDELFQSQIEKKKNQNIKMVQIPFSMERLKKNFDKHEKFDLE
EKDELCLIHNLKFPDAWLITSKTEIMLLNPYRVEEALLFKRLLENHKLPAEPLEKPIILT
ESLFNGSHYLEILYKMTADDQRYSGSTYLSDPRLTANGFKIKLTPGVSIAENYLEIEGMA
NCLPFYGVMDLKEILNAILNKNAKEVYECRPRKVISYLEGEAVRLSRQLPMYLPKEDVQD
IICRMKHQFRNEIKGCVHGRPFFHHLTHLPEAT
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagttgcctgcagcaacagttcgactcctttcaagttctcaagtaatcacctca
gtggtcagtgttgtaaaagaactcattgaaaactccttggatgctggtgccacaagcata
gacgttaaactggagaactatggatttgataaaattgaggtgcgagacaatggtgagggt
atcaaggctgttgatgcaccagtaatggcaattaagtactacacctcaaagttaaacagt
catgaggatcttgaaactttgacaacttacggttttcgaggagaagccttggggtcaata
tgttgtatagctgaggttttaattacaacaaggacagctgctgataattttagcacccag
tatgttttagatggcagtggctacataatttctcaaaaaccttcacatctcggtcaaggt
acaactgtaacggttttgcgattgtttaagaatctacctgtaagaaagcagttttactca
actgctaaaaaatgtaaagatgaaataaaaaaggtccaagatctccttataagctatggt
ataattaagcctgatgtaaggattgtttttgtacataacaaggcaattatttggcagaaa
actagagtatcagatcataaaatggctcttatgtctgttctggggactgctgttatgggc
aatatggaattcattcaataccattctgaaaaatctcagatttatctaagtggatttttt
ccaaagcatgatgcagaccactctttaacaagtctttcaaccccagaaaggagtttcatc
tttataaacaatcgaccagtacaccaaaaagacatattaaagctaatccgacatcattac
aatttgaaatgtctaaaggaatctactcgtttgtatcccattttctttctgaaaattgat
gttcccacagctgatgtagatgtgaatttaacgccagataaaagtcaagttttattgcag
aataaggaatctgttttaattgctcttgaaaatctgatgacgacttgttatggatcacca
cctagtacaaattcttatgaaagtaataaaacagatgtttccttagttgacatggttgtt
agtaaaacaacagaaacagatgtgctttttactaggatggaaacgtctggaaataattat
ccaaatgttgatacttcagccgccgttcctttccaaaatgatgtgcataatgataaatct
gagaagaacactaattattgtttaaatcagcagatacctcttggtgaccattatgatgat
cattttagtagtgaaaattctagaattgataagaatgcaagaaatacatttcaagagatc
ccaatgaataatttatcatgtgaggacacccaaaaggaatacaatgaaacttgtttttta
ggttctgttaagcatgcccaatcagaaaacagcaataaaggtcatatagatgaaagtggg
gaaaatgaagaagcagttcctgaggagtctttggaaatttgtgcagatgactggagcaag
ggaaatgtacttaaaaattcagaaggagaaaacattgaacctgtgaaaattctagtgcct
caagaaagtttaccatgtaaagtaggtaataataatcatcatcactcagatcctgaacaa
aagaatctcaatgaaggttcctgtagcaaaaaatcaaacgtggtagataacaaatctgga
cagcttacagcttatgatttaattagcagtcgagtaatcaagaaacccatgtcagcaagc
gccctttttgttcaagatcatcgtgctcagtttttcacagaaaattccgaggctggtttg
gagaatgcaacagtacaaactgaagaactgtggaagacattgagtgaggaggaaaaactg
aaatatgaagagaaggctgctaaagacttggaacgatacaataggcaagtcaagagagcc
attgaacaggagtcacaagtattaaaagatggcaaaaaaaggataaaacccaccagtgca
tggaatttggcacagaagcacaagttaaagacttcattatctaatcagccaaaacttgat
gagctctttcagtcccaaattgaaaaaaaaaagaatcagaacattaaaatggttcagatc
cccttttctatggaaaggttaaaaaagaattttgataaacatgagaaatttgacttagaa
gaaaaggatgaactttgcttgatccacaatctcaagtttcctgatgcatggctaattaca
tccaaaacagagataatgttattaaatccatatagagtggaagaagctctgctatttaag
aggcttcttgagaatcataaacttcctgcagagccactggaaaagccaattatattaaca
gagagtctttttaatggatctcattatttagagattttatataaaatgacagcagatgac
cagagatatagtggatcaacttacctgtcagatcctcgtcttacagctaatggtttcaag
ataaaattgacaccaggagtttccattgctgaaaactacttggaaatagaaggaatggct
aattgtctcccattctatggagtgatggatttaaaagaaattcttaatgctatattaaac
aaaaatgcaaaggaagtttatgaatgtagacctcgcaaagtgataagttatttagaggga
gaagcagtgcgtctgtctagacagttacctatgtacttaccaaaagaagacgtccaagac
attatctgcagaatgaagcatcaatttagaaatgaaattaaaggatgtgttcatggtcgc
ccattttttcatcatttaacccatcttccagaagctacatga
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