Vicugna pacos (alpaca): 102533734
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Entry
102533734 CDS
T08098
Symbol
DDX23
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102533734 (DDX23)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102533734 (DDX23)
Enzymes [BR:
vpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102533734 (DDX23)
Spliceosome [BR:
vpc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102533734 (DDX23)
Complex C
U5 SnRNP specific factors
102533734 (DDX23)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DDX23
ResIII
Mycobacteriophage_73
Motif
Other DBs
NCBI-GeneID:
102533734
NCBI-ProteinID:
XP_006202985
UniProt:
A0A6I9I415
LinkDB
All DBs
Position
12
AA seq
820 aa
AA seq
DB search
MAGELADKKDRDASPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSR
SRSRSKSTERERRHKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRK
DRDSKKDDEDEHGDKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQQE
VEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERRERMERETNGNEDEEGRQKIREE
KDKSKELHAIKERYLGGIKKRRRTRHLNDRKFVFEWDASEDTSIDYNPLYKERHQVQLLG
RGFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDDRHWSQK
KLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQ
AIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTREL
AQQIEEETIKFGKPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVL
SRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYR
QTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAILE
QGFDPPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVA
TDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELK
QAILESPVSSCPPELANHPDAQHKPGTILTKKRREETIFA
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagagctggctgataagaaggaccgtgatgcatcaccttccaaggaggaaagg
aagcgatctcggactcctgacagagaacgggatagagaccgggaccggaagtcttcccca
tctaaagataggaaacggcatcgttccagggacaggcgtcgaggaggcagccgttctcgc
tcccgttcccgctccaagtctacagaaagagaacgccggcacaaagagcgagaacgagat
aaggaacgtgatcggaataagaaggaccgggatcgggataaggatgggcacagacgggac
aaggaccggaagcgatccagtttatctcctggccgaggaaaagattttaagtctcggaaa
gacagagactctaagaaagatgatgaggatgaacatggtgataagaagcctaaggcccag
ccattatcgctggaggaacttctggccaagaaaaaggctgaggaagaagctgaggctaag
ccgaagttcctctccaaagcagaacgagaggccgaagccctaaagcgacggcaacaggag
gtggaagagcggcagaggatgcttgaagaagagaggaagaaaaggaaacagtttcaagac
ttgggcaggaaaatgttggaagaccctcaggagcgggagcggcgggaacgcagggagagg
atggagcgggagacaaatggaaatgaggacgaggaggggcggcagaagatccgggaggag
aaggataagagcaaggaactgcatgccattaaggagcgttacctgggtggcatcaagaag
cggcgccgaacaaggcatctcaatgaccgcaagtttgtctttgagtgggatgcctctgag
gacacatccattgactacaaccccttgtacaaagaacggcaccaagtgcagttgttgggg
cgaggtttcattgccggcatcgacctaaagcagcagaaacgagagcagtcgcgtttctat
ggtgacctaatggagaagaggcggacgcttgaagaaaaggagcaggaggaggcaagactc
cgcaaacttcgtaagaaggaagccaagcaacgctgggacgatcggcattggtcccagaag
aagttggatgagatgacagacagggactggcggatcttccgtgaggactacagcatcacc
accaaaggtggcaagatccccaatcccatccgatcctggaaggactcttccctgccccca
cacatcttggaggtcatcgataagtgtggctataaggaaccaacacctatccagcgtcag
gcaattcccattgggctacagaatcgtgacatcattggagtagctgagacgggcagcggc
aagacagcagccttcctcatcccgttgctggtctggataaccactctccccaaaattgac
aggatcgaagagtcagaccagggcccttatgccatcatcctggcccctactcgtgagctg
gctcagcagattgaggaagagaccatcaagtttgggaagccactgggcatccgcactgtg
gctgtcattggcggcatctccagagaagaccagggcttcaggctgcgcatgggttgtgag
atagtgatcgctaccccgggacgtctgattgatgtgctagagaaccgctacctggtgctg
agccgctgtacctacgtggttctggatgaggcagataggatgattgacatgggctttgaa
cccgacgtccagaagatcctggagcacatgcctgtcagcaaccagaagccggacacagat
gaggctgaggaccctgagaagatgttggccaactttgagtcaggaaaacataagtaccgc
caaacagtcatgttcacggccaccatgcccccagcggtggagcgtctggcccggagctat
cttcggcggcctgctgtggtgtacattggctctgcaggcaagccccatgaacgtgtggaa
cagaaggtcttcctcatgtcagagtcagaaaagaggaaaaagctgctggcaatcttggag
caaggcttcgatccacccatcatcatttttgtcaaccagaagaagggctgtgatgttttg
gccaaatccctggagaagatggggtacaatgcttgtacactgcatggtgggaaaggccag
gagcagcgagagtttgcactatccaacctcaaggctggggccaaggatattttggtggct
acagacgtggcgggtcgtggtatcgatatccaagatgtgtctatggtcgtcaactatgac
atggccaaaaacattgaagattatatccaccgcattggccgcacgggacgagcaggcaag
agtggtgtggccatcaccttcctcaccaaagaggactctgctgtgttctatgagctgaag
caagctatcctggagagcccagtgtcgtcctgccccccagagctagccaaccacccagat
gcccagcacaagccaggcaccatcctcaccaagaagcgccgggaagagaccatctttgcc
tga
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