Vicugna pacos (alpaca): 102534235
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Entry
102534235 CDS
T08098
Symbol
COL11A2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc04820
Cytoskeleton in muscle cells
vpc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102534235 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102534235 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
vpc00536
]
102534235 (COL11A2)
Glycosaminoglycan binding proteins [BR:
vpc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102534235 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
102534235
NCBI-ProteinID:
XP_006202198
UniProt:
A0A6I9I5N9
LinkDB
All DBs
Position
20
AA seq
1736 aa
AA seq
DB search
MERCSRCHRLLLLVPLVLGLSAARAWAGAPPVDLLRALRFPSLPDGVRKARGICPSDVAY
RVSRPAQLSAPTRQLFPGGFPKDFSLLTAVRTRPGLQAPLLTLYSAQGVRQLGLELGRPV
RFLYEDQTGRPQPPAQPVFRGLSLADGKWHRVAVAVKGQSVTLIIDCKKRVTRPLPRSAR
PVLDTLGVIIFGARILDEEVFEGDVQELVIVPGVQAAYDSCEQKELECERGWRERPQKQQ
SHRSQRSPKQQPSRLHRPQNQEPQQQSIESLYYDYEPPYYDVMTAGTTPDYQDPTPGEEE
EILESSPSPPPEEEQTDLQVPSTADRFLTEEYGEGGTDPPAGPYDYTYGYGDDYREETEL
GPALSAETAHSGAAARGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLTGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGAPGPPGTAFMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPRGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDMGVKGDRGEVGVPGARGEDGPEGPKGRTGPT
GDPGPPGLIGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLTGTA
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGAGLKGNEGPAGPPGPAGSPGER
GSAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPLGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP
GGVGNLGPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQPGEAGPPGPKGPTGDD
GPKGNPGPVGFPGDPGPPGESGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR
GPAGTPGPEGRQGEKGAKGDPGAVGAPGKTGSVGPAGPAGKPGPDGLRGLPGSVGQQGRP
GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGST
GQKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSRLMQEEEAMPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSPVGVVQLTFLRLLSVSAHQNVSYPCSGEARDGPLKLRGANEDELSPETSP
YVKEFRDGCQTLQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagccgctgccatcgtctcctcctgctagtaccgctggtgctggggctg
agcgcggctcgggcctgggcaggtgcaccccctgtggacttgcttcgggccctgaggttc
ccctccctccctgatggtgtccggaaggcgagaggcatctgtccatctgatgtggcctac
cgagtgtcccgacctgcccagctcagtgcacccacccgccagctcttcccaggaggcttt
cccaaagatttctctttgctgactgctgtccggacacgccctggcctccaggctcccctg
ctgacactctacagtgcccagggtgtccgacagctgggcctggagcttggccgacctgtc
cgcttcttatatgaggaccagaccggccggcctcaacctccagctcagcctgtcttccga
ggcctcagcctagcagatggcaagtggcaccgtgtggctgtggctgtgaagggccagtct
gtcaccctcataattgactgcaagaaacgagtcacccggcccctcccccgaagtgctcga
ccagtattggatacccttggagtcataatctttggtgctcgtatcttggatgaagaagtc
tttgagggtgacgtccaggaacttgtcattgttccgggggtgcaagctgcctacgattca
tgtgaacagaaggagctggagtgtgagaggggttggagagagagacctcagaaacaacag
tctcacagatcccagagatctccgaagcagcaaccatcaagacttcataggccacaaaac
caggaaccccagcagcagtccattgagtctctctactatgactacgagcccccctattat
gatgtgatgactgcggggacaacccctgattatcaggaccccaccccaggtgaagaggaa
gaaatcctggagtcaagcccctcgccaccccctgaggaggagcagacagatctccaggtc
ccctccacagccgacaggttcctgacagaggaatatggggagggtggcacagacccccca
gcagggccctacgattacacctatggctatggggacgattatcgtgaggagacggagctt
ggccctgccctctctgcggagacagcccactcaggagccgctgcccgtggaccccggggg
ctgaagggagagaagggggagcctgcagtgctggaacctggcatgctggtggaggggccc
cctggtccagaaggccctgcgggattgactggtccccctggcatccaaggcaatccaggc
ccagttggagaccctggcgagaggggtccccccggccgagcagggctccctggatcagat
ggggcccctggccctcccggcacagcctttatgctcccattccggtttggcagtggcggg
ggtgacaagggccccgtggtggcggcccaggaggctcaggcccaggcaattctgcagcag
gcacggctggcactccgtggaccccctggccccatgggatacacaggccgccctggaccc
ttgggacaacctgggagccctggcctgaaaggagaatctggagacctaggacctcagggt
cccagaggacctcagggcctcacaggccctcccggcaaggctgggcgaaggggccgagct
ggtgctgatggagcccgagggatgcctggagaacctggagtgaagggtgaccgaggtttt
gatggactcccagggctacctggggagaagggacacaggggtgatactggtgcccagggc
cttcctgggccccctggtgaggatggagagcggggagacgatggggagattggacctcgg
gggctgcctggagagtcgggacctcgaggtctccttggccccaaaggcccacctgggatt
cctggacccccgggagtccgaggcatggatggtccccatggtcccaaaggaagcttgggt
ccccagggagagccaggccctcctggacagcagggcactcctgggacccagggtctgccc
gggccccagggtgccattggccctcatggagagaagggtcctcgagggaaaccagggctc
cctggcatgccaggctcagatgggcccccgggtcaccccggcaaagaaggtccccctgga
accaaaggaaaccagggtccatctggacctcagggtcctctgggatacccgggacctcga
ggtgtcaagggtgtggacggaattcggggtctgaagggtcataaaggtgaaaagggcgag
gatggctttcctggattcaaaggtgacatgggtgtgaaaggcgacaggggcgaggttgga
gttcctggtgccaggggagaggatggtcctgaggggccaaagggacgcaccggacccact
ggagaccctgggcctcctgggcttataggcgagaagggcaagctgggtgttcccggtctg
cctggctaccccggacgccagggtcccaaggggtccctgggatttcctggttttcctgga
gccagtggagagaagggagcccggggcctgtcggggaaatcagggcctcggggagagcgg
ggccccacgggtccaaggggccagcggggaccccgaggtgccactgggaagtctggagct
aagggaacatcgggtggtgatggcccccatgggccccctggagagaggggtctccctgga
cctcagggccccaacggatttcctggccccaagggacctccaggtccccctgggaaggac
gggctgccgggacatccaggccagagaggagaagtgggtttccaagggaagactggcccc
cctggccccccaggagtggtgggaccccagggagctgcaggagaaactgggcccatgggg
gagagaggtcacccaggcccgcccggcccccctggagagcagggactgactgggacagct
ggaaaagaaggaacaaagggtgaccccggtccccctggggccccagggaaggatggtcct
gctggtctaaggggcttcccaggagaaagaggcctccctggcactgctggtggagctggt
ttgaagggaaatgaaggtccggctggtccccctggccctgcaggatcccctggggagcga
ggttcagcaggatctggaggacccattggtcccccagggcgcccaggacctcagggcccc
cctggagcagcaggagagaaaggtgtcccgggtgagaagggccccattggtccaactggc
cgtgatggggttcagggtccggtggggcttcctggtcctgctggacccccaggcgtggca
ggagaggatggagacaagggtgaggtgggagaccctggacagaagggcactaaagggaac
aagggtgaacatggccctcctggaccccctggacccctcggtcctgtggggcagcctgga
gcagcgggagcagatggggagcctggagcccggggtccccaggggcattttggagccaaa
ggtgatgaaggaacaagaggattcaatgggcccccaggacccattggtctacagggtttg
ccaggcccctcaggagagaagggagaaacaggagacgtgggccctatgggaccacccggc
cccccaggacctcgaggcccagctggacccaatggagctgatggtccacaaggtccccca
ggaggtgttgggaacctgggtccccctggagagaagggggagccaggagagtcaggatct
cctggagtccagggcgagccaggtgttaagggtccacgcggggagcgtggggagaaagga
gagtcagggcagccaggagaggcaggaccaccagggcctaaaggccccaccggcgatgat
ggccccaaagggaaccctggtcctgttggttttcctggtgaccctggccctcctggagaa
agtggacctcggggccaggatggtgctaagggtgaccgtggagaggacggagagccagga
cagcctgggtcccctggtcccactggggagaatggacctcctggaccgcttggaaagcgg
ggtcctgctggcacacctggtcctgaggggagacaaggagagaagggggccaagggggat
cctggtgctgtgggtgccccagggaagacaggctccgtgggtcctgcaggcccagcagga
aaacctggtcctgatggtctgagggggctcccaggctcagtgggtcagcaaggccgtcct
ggggccacaggccaggccggacctccaggtcctgtgggacccccagggcttcctggcctc
cggggtgatgctggggccaagggagagaagggtcacccaggtctcattggactgattggc
ccccctggggagcagggagagaagggtgatcgaggacttcctggccctcagggctccact
ggacaaaagggagagactggcatcccaggagcatctggccctattggtcctggagggccc
cccggcctccctggacctgctggccccaaaggagccaaaggagccacaggcccagctgga
cccaagggagagaagggcgtccagggccctccaggacacccggggcccccaggcgaggtg
atccagcccctgcccatccagatgcccaagaagactcggcgctcagtggacggaagccgc
ctgatgcaggaagaggaggccatgccaactgggggggccccaggcagtcctggggggctg
gaggagatctttggctcacttgactccctgcgggaggaaattgagcagatgaggcgtccg
acagggacccaggacagccccgctcgcacctgccaggacctgaagctctgtcacccagag
ctgcccgatggagagtactgggtcgaccccaaccagggctgtgctcgggatgccttccgg
gttttctgcaattttacagcaggaggggaaacctgtgtgacgcccagggatgatgtcaca
cagttctcttacgtggactcagaaggctccccggtgggcgttgtccaactcaccttcctg
cggctgctcagcgtctccgcccaccagaacgtctcctacccgtgctctggggaggcccgg
gatgggcccctgaagctccgcggggccaatgaagacgagctgagcccagagaccagcccc
tacgtcaaggaattcagagacggctgtcagactctgcaaggccggacggtgctagaggtt
cgaacacctgtgctggagcagctgcctgtgctggatgcctccttctcagatctgggggcc
cccccaaggcggggaggggtgctgctggggcctgtatgcttcatgggctag
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integrated database retrieval system
