Vicugna pacos (alpaca): 102534571
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Entry
102534571 CDS
T08098
Symbol
VPS39
Name
(RefSeq) LOW QUALITY PROTEIN: vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc04140
Autophagy - animal
vpc04148
Efferocytosis
vpc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102534571 (VPS39)
04148 Efferocytosis
102534571 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
102534571 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vpc04131
]
102534571 (VPS39)
Membrane trafficking [BR:
vpc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
102534571 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
102534571
NCBI-ProteinID:
XP_031528562
UniProt:
A0A6J3A5M1
LinkDB
All DBs
Position
Unknown
AA seq
864 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVSADVASPESGSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLQHAETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCA
LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKSCFSLSLNCCVPFWGIHADPTHVMGL
YPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKLNDSDHQSSTSP
LMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHVLKKAHKY
SELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLIFSYSVWVL
RDFPEDGLKIFTEDLPEVESLPRDRVLGFLVENFKGLAIPYLEHIIHVWEETGSRFHNCL
IQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEXGELGEYRQKLLMFLEISSYYDPGRLICD
FPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKHYDRNKDGNKDVYLSLL
RMYLSPPSVHCLGPIKLELLEPQANLQAALQVLELHHSKLDTTKAINLLPANTQINDIRI
FLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKVCMVCKKKIGNS
AFARYPNGVVVHYFCSKEVNPADT
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccaatcctagaaaagctgcctctgcagatcgactgt
ctggctgcctgggaggaatggctgcttgttggaacaaaacaaggacatcttcttctttat
aggattagaaaggatgttgtgtcagcagatgtagcatcacctgagagtggcagttgcaac
aggtttgaagtgacactagagaaatccaataagaacttctccaaaaagattcagcagatc
catgtggtttcccagtttaagatcctggtcagcttgttagaaaataatatttatgtccat
gacctgttgacatttcaacaaatcactacggtttctaaggcaaagggagcatctctgttc
acatgtgacctccagcacgcagagactggtgaggaggtgttgcggatgtgtgttgctgtg
aaaaagaagctgcagctctatttctggaaagacagggaatttcacgaattgcagggggac
tttagtgtaccagatgtacccaaatccatggcatggtgtgagaactctatctgtgtgggt
ttcaagagagactactacctaataagggtggatggaaaggggtccatcaaagagctcttt
ccaacaggaaaacagctggaacccttggttgcccctctggcagatggaaaagtagccgta
ggtcaggatgatctcaccgtggtgctcaatgaggagggggtctgcacgcagaagtgtgcc
ctgaactggacagacatcccggtggccatggagcaccagcctccctacatcattgcagtg
ttgcctcgatacgtggagatccgaacatttgagccaaggcttctggtccagagcattgaa
ttgcagaggcctcgtttcattacctcgggaggatcaaacattatctatgtggccagcaac
cattttgtttggagactcattccagtccccatggcaacccaaatccagcagcttctccag
gacaagcagtttgaattggctctgcagcttgcagaaatgaaatcttgtttcagtttatcc
ttaaattgctgtgttcctttctggggaatccatgcagatcctacccatgtgatgggcctg
taccctgacctgctgcccacggactacaggaagcagctgcagtatcctaacccactgcct
gtgctctctggggctgaactggagaaggctcacttggctctgattgactacctgacgcag
aaacgaagccaactggtaaagaagctgaatgactccgatcaccagtccagcacctccccg
ctcatggaaggcactcctaccatcaaatccaagaagaagctgctgcagatcattgacacc
accctgctcaagtgttacctccatacgaacgtggccctggtggcccccttgctgcgcctg
gagaacaatcactgccacatcgaagagagtgaacatgtgctgaagaaggctcacaagtac
agtgaactgataatcctgtacgagaagaaggggctccatgagaaagctctgcaggtgctg
gtggaccagtccaagaaagcaaactcccctctgaaaggccacgagaggacggtgcagtac
ctgcagcatctgggcacagaaaacctgcatttgattttttcctactcggtgtgggtgctg
agagacttcccagaggatggcctgaagatatttactgaagacctcccagaggtggagtct
ctgccacgagaccgagtgcttggcttcttagtggagaattttaagggcctggctattccg
tatctggaacacatcatccatgtttgggaggagacaggctctcggttccacaactgcctg
atccagctgtactgtgaaaaggtgcaaggtctgatgaaggagtatctcctttccttccct
gcaggcaaaactccagtccccgctggagaggagngaggggagctgggagaataccgacag
aagctcttgatgttcctggaaatttccagctactatgatccaggccggctcatctgtgat
tttccttttgatggcctcttagaagagcgtgctctcctcctgggacgcatggggaaacac
gaacaagctctcttcatctatgtccacatcctgaaggataccaggatggctgaagagtat
tgccacaagcattatgaccgaaacaaagatggcaacaaagatgtgtatctgtccctgctc
cggatgtacctgtcaccccccagcgtgcactgcctggggccaatcaagctggaactgctg
gagccacaggccaacctccaggccgccctgcaggtcctcgagctgcaccacagcaaactg
gacaccaccaaggccatcaacctcctgccagcaaacactcagattaatgatatacgcatc
tttctagaaaaggtcttggaagagaatgcgcaaaagaagcggttcaatcaagtgctcaag
aaccttctccatgcagagttcctgagggtccaggaagagcggattttacaccagcaggta
aagtgcatcatcacggaggagaaggtgtgcatggtctgtaagaagaagattggcaacagt
gcatttgcaagataccccaacggagtggtcgtgcactacttctgctccaaagaggtcaac
ccagctgatacctga
DBGET
integrated database retrieval system
