Vicugna pacos (alpaca): 102534893
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Entry
102534893 CDS
T08098
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102534893 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102534893 (EDC4)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102534893 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
102534893 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
DUF445
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
102534893
NCBI-ProteinID:
XP_006203774
UniProt:
A0A6I9I836
LinkDB
All DBs
Position
9
AA seq
1402 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAESQRPSNAYNGDLNGLLVSDPLCSGDGT
STNKPGLRAMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHVNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFNSVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAIESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHP
AHEDFAFGESQPELGSEGLGSATHDSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFM
TPSASLQQITASPSSSSSSSSSSSSSSSSSLTAVSAMGSTSAVDPSLSRPPEELTLSPKL
QLDGGLTMSSSSNLQASPRSLLPSLLPGPADKLTPKGPGQVPTATSTLSLELQEVEPLGL
PQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSASEGLEPDSMASAASALHLL
SPRPRPGPELGPQLNLDGGPGDADRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETCS
SLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGGFGTKV
PTPRLPAKDWKAKGSPRASPKLKRKGKKDDGDSSVGSRLTEHQVAEIPEDWPALIWQQQR
ELAQLRHSQEELLQRLCTQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQL
QEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPMAGQLSNSVATKLTAVEG
SMKETISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIND
SFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRSLVSTLQGATEQMAATVSSSVRAE
VQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAHL
DCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLFVCETVDPGQVFGQPPCPLSQPVLL
SLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHN
SLGKAARRLSLMLHGLMTPSLP
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacata
ctcaagctggaccggcctgcggggggccccagtgcagagagccagcgaccatctaatgcc
tacaatggcgatctcaatgggctcctggtctcagaccccctctgctcaggtgatggtact
tcaacaaacaagcctggtctccgggccatgccacctattaacctgcaggaaaagcaagtc
atatgcctctcaggagacgacagctccacctgcatcgggattttggccaaggaggtggag
attgtggccagcagtgattctagcatctcaagcaaggcacgggggagcaacaaggtgaaa
atccagcccgtcgccaagtatgactgggagcagaaatactactatggcaatctgattgct
gtgtccaactccttcttggcctatgccattcgggctgccaacaacggctcagcaatggtg
cgggtgatcagtgtcagcacttcggagcggaccctgctcaaaggtttcacaggcagtgtg
gctgatttggcctttgcacacgtcaattccccacagctggcctgtctggatgaggcaggc
aacctgttcgtatggcgcttagctttggttaatggcaaaattcaagaagagatcttagtt
catatccgacagccagagggcacgccactgaaccactttcgcaggatcatctggtgcccc
ttcatccctgaagagagtgaggactgctgtgaggagggcagcccaacagtggccctgtta
catgaggaccgggctgaagtatgggacctggacatgcttcgctccagccacagcacctgg
cctgtggatgtcagccaaatcaagcagggcttcatcgtggtaaaaggccacagcacatgc
ctgagtgaaggggccctctcacccgatgggactgtcctggctaccgcaagccatgatggc
ttcgttaagttttggcagatctacattgaggggcaggatgagccaaggtgtttacacgag
tggaagcctcatgatgggcggcccctctcctgcctcctgttctgtgacaaccacaagaaa
caggaccctgaggtccctttctggaggttcctcattactggcgctgaccaaaatcgggag
ctgaagatgtggtgcactgtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcaactcagtgagtgtgcctcccagcctcaaggtttgcttggatctctcagcagaa
tacctgattctcagcgatgtacaacggaaggtcctctacgtgatggaactgctgcagaat
caggaggagggccgtgcctgcttcagctccatctctgagttcctgctcacccaccctgtg
ctgagcttcggtatccaggttgtaagtcgctgccggctgaggcacactgaggtgctgcct
gccgaggaggagaatgacagcctaggggctgatgggacccacggagccggtgccattgag
tctgcagctggtgtgctcatcaagctcttttgtgtacacactaaggcattgcaagacgtg
cagatccgcttccagccacagctgaaccctgatgtggtggccccactccccacacaccct
gcccatgaggactttgcatttggagagtctcagcctgaactgggctctgagggcctaggg
tcggccactcatgactcccagcctgacctccgacgcattgtggagctacctgcacctgcc
gacttcctcagtctgagcagtgagaccaaacccaagctgatgacacctgacgccttcatg
acgcccagcgcctccctgcagcagatcactgcgtctcctagtagcagtagtagcagtagc
agcagcagcagcagcagcagcagctcctctcttacagctgtgtctgccatgggcagtact
tcggctgtggacccctccttgtccaggccacctgaggaactgaccttgagccccaagctg
cagttggatggtggtctgacaatgagcagcagcagcaacctgcaggcaagcccacgcagc
ctcctgcccagcctgctcccaggtccggccgacaaattgactcccaaagggcctgggcag
gtgccaactgccacctctacactatccctggagctgcaggaagtagagcccctggggctg
cctcaggcttcccctagccgcacccgctcccccgatgttatctcctcagcttccactgcc
ctgtcccaggatatccctgagattgcatctgaggcactgtcccgtggctttggctcctct
gcttctgagggtctagagccagacagtatggcctcagctgcctcggcactacaccttctg
tccccacggccccggccggggcccgagcttggcccacagcttaacttggatggaggccct
ggggatgcggatcggcatagtaccccttccctcctggaggcagccttgacccaggaggcc
acagcccctgacagtcaagtctggcctacagcacctgacattactcgtgagacctgtagc
agcctggcagagagccccaggaatggcctccaggaaaagcacaagagcctggctttccac
cgaccaccttatcacctgctgcagcaacatgacagccaggacgccagcgccgagcaaagt
gaccacgatgatgaggtggccagccttgcctctgctgcagggggctttggcaccaaagtt
cccactccgcgtcttcctgccaaggactggaaggccaagggatcccctcgggcctcaccc
aagctcaagagaaagggcaaaaaggatgacggggattcatcagtgggatcccggctcaca
gagcaccaggtggcagaaatccctgaggactggccagcgttaatttggcaacagcagaga
gagctggcgcagctgcggcacagccaagaggagctgctgcagcgtctgtgcacccagctt
gaaggtctgcagagcactgtcacaggccatgtagaacgtgccctagagtcacggcatgag
caggagcagcggcgactagagcgggcactggctgaagggcagcagcgaggtgggcagctg
caggagcagctgacgcaacagttgtcccaagctctgtcttcagctgtggctggacggctg
gagcgcagcatacgggatgagatcaagaagactgtgcctccatgtgtctctcgaagcctg
gagcccatggcaggccagctgagcaactcggtggccacaaagctcacagctgtggagggt
agcatgaaagagaccatctccaaactgctaaagtccaagaacttgacagatgccattgcc
cgagcagctgcagacacattacaggggccaatgcaggccgcctaccgtgaagccttccag
agcgtggtgctgcccgccttcgagaagagctgccaggccatgttccagcagatcaatgat
agcttccgactgggcacacaggaatacttgcagcagctggagagccacatgaagagccga
aaggcacgtgagcaggaggcgcgagagcctgtgctggcccagctgcggagcctggtcagc
acactgcagggggccactgagcaaatggcggcgaccgtgtccagtagtgttcgggctgag
gtgcagcaccagctgcatgtggctgtgggcagcctgcaggagtcaattttagcacaagta
cagcgcattgtcaagggtgaggtgagtgtggcactcaaggagcagcaggccgccgtcacc
tctagcatcatgcaggctatgcgctcagctgctggcacacccgtccctgctgcccacctc
gactgccaagcccagcaagcccatatcctgcagctgctgcagcagggccacctcaatcag
gccttccagcaggctctgactgctgctgacttgaacctggtgctgttcgtgtgtgaaact
gtagacccaggccaggtttttgggcagccaccttgccccctctcccagcctgtactcctg
tcactcatccagcagctggcctctgaccttggcactcgaactgacctcaagctcagctac
ctggaagaggctgtgatgcacctggaccacagtgaccccatcactcgggaccacatgggc
tccgtcatggcccaggtgcgccagaagctcttccagtttctgcaggccgagccacacaac
tcacttggcaaagcggcccggcgtctcagcctcatgctgcacggccttatgacccctagc
ctcccttag
DBGET
integrated database retrieval system
