Vicugna pacos (alpaca): 102535438
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Entry
102535438 CDS
T08098
Symbol
DDX18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102535438 (DDX18)
03009 Ribosome biogenesis [BR:
vpc03009
]
102535438 (DDX18)
Enzymes [BR:
vpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102535438 (DDX18)
Spliceosome [BR:
vpc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102535438 (DDX18)
Ribosome biogenesis [BR:
vpc03009
]
Eukaryotic type
90S particles
Helicases
102535438 (DDX18)
Pre-60S particles
102535438 (DDX18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
ERCC3_RAD25_C
DUF6496
Motif
Other DBs
NCBI-GeneID:
102535438
NCBI-ProteinID:
XP_015097030
UniProt:
A0A6J0AM35
LinkDB
All DBs
Position
5
AA seq
725 aa
AA seq
DB search
MSHLPMKLLRKKIEKRNLKLRQRNLKLQGASSVSLSETQNGDVSEETVGGGKVKKSLKQS
MNVGLSEAPNGDVSKETVDGRKVKKSLKQSMNEGLTETPNGDISKEAVGVGKVKKSLKAS
VNAGLSEAQNGDVAKETVGKVKVKKSSKESTILTSEEAAMQSPNSDSKKKKKKKKKRKMV
DDAGPDTKKAKTEDNGQAPEETEDSVEKPEDGDDGSEVPNLPLGLTGAFEDTSFASLANL
VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLK
FMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLANGINII
VATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSA
TQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVICPSEKRFLLLFTFLKKNRK
KKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVA
ARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSK
VPLSEFEFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLN
LPHVALSFGFKVPPFVDLNVNSNDGKLKKRGGGGGFGYQKARKVEKSKIFKHISKKPSDR
RQFSH
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtctcatttaccgatgaaacttttacgcaagaagatcgaaaagcggaacctcaaattg
cgacagcgaaacctgaagctacagggggcctccagtgtgagcctttcagaaactcaaaat
ggagatgtgtctgaagaaacagtgggaggtggaaaagttaagaagtctttaaaacagtct
atgaatgtgggcttgtcagaagctccaaacggagatgtatctaaagaaacagtagatggt
agaaaagttaaaaagtctctgaaacagtctatgaatgagggcttgacagaaaccccaaat
ggagatatttctaaagaagcagtaggagttggaaaagttaaaaaatccttgaaagcgtct
gtgaatgcaggcttgtcagaagcccaaaatggagatgtagctaaagaaacagtgggaaaa
gtaaaagttaaaaaatcttccaaggaatctaccatactgaccagtgaggaggcagcgatg
cagtctcccaattcagattcaaaaaagaagaagaagaagaagaaaaagagaaaaatggtg
gatgatgctggccctgatactaaaaaagcaaaaactgaagacaatggccaggctcctgag
gaaacagaagacagtgtggagaagccagaggacggggacgatggcagcgaggtgcccaac
ctgcccctgggactgacaggagcttttgaggatacttcatttgcttcgctagctaatctt
gttaatgagaacactctgaaggcaataaaagaaatgggcttcacaaacatgactgaaatt
caacataaaagtatcagaccgcttctggaaggcagggatcttctagcagctgcaaaaaca
ggcagtggcaaaactctggcgtttcttatccccgcagttgaactcattgtgaagttgaag
ttcatgcccaggaatggaacaggagtcctgattctctcacctaccagggagctggccatg
cagactttcggtgttcttaaggagctgatgacacaccacgttcacacatacgggttaatc
atgggcggcagtaacaggtctgccgaagcacagaaacttgccaatgggatcaacatcatt
gtggccacgccaggccgtctgctggaccacatgcagaacaccccggggtttatgtataaa
aacctacagtgtctggttatcgatgaggctgatcgtatcttggatgttgggtttgaagag
gaattaaagcaaattattaaacttctgccaacacgcagacagaccatgctcttttctgcc
acacaaacgcggaaggttgaagacctggcgaggatttctctgaaaaaggagcccttgtac
gttggtgttgatgatgacaaagctaacgccacggtggatggtcttgagcagggatatgtt
atttgtccctcggaaaagagattcctcctgctctttacgttccttaagaagaaccggaaa
aagaagctcatggtcttcttttcatcctgtatgtctgtgaaataccactacgagttgctg
aactacattgatttgcctgtcttggccattcatggaaagcagaaacaaaacaaacgcacg
accaccttcttccagttctgcaatgcggattcggggacactgctgtgtacagacgtggca
gctagagggctggacattcctgaagttgactggattgttcagtatgaccctccagatgac
cccaaggagtacatccaccgtgtgggtagaacagcccggggcctgaatggaagagggcac
gccctgctcatcctgcgcccggaagaactgggtttcctccgctacttgaagcaatccaag
gttccattaagtgaatttgagttttcttggtccaaaatttcagacattcagtctcagctt
gaaaaactgattgaaaagaactacttccttcacaagtcagcccaggaggcatataagtca
tacatccgagcatatgattcccactctctgaagcagatctttaacgttaataacttaaat
ttgcctcatgttgctctgtcgttcggtttcaaggtgcctccttttgttgacctgaacgtg
aacagcaatgacggcaaacttaaaaagagaggaggcggcggtgggttcggctaccagaaa
gccaggaaagtggagaagtccaagatcttcaaacacattagcaagaaaccttccgacagg
aggcagttctcccactga
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