Vicugna pacos (alpaca): 102535614
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Entry
102535614 CDS
T08098
Symbol
DHX16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102535614 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102535614 (DHX16)
Enzymes [BR:
vpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102535614 (DHX16)
Spliceosome [BR:
vpc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102535614 (DHX16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_30
SecA_DEAD
nSTAND3
Flavi_DEAD
Cas3-like_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
102535614
NCBI-ProteinID:
XP_006215351
UniProt:
A0A6I9IPA0
LinkDB
All DBs
Position
20
AA seq
1045 aa
AA seq
DB search
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLSGPAR
DFALRLWNKVPRKAVVEKPARAAEREARALLEKNRSYRLLEDSEESSEETIGRTGSNLQK
KRKKRKHLRKKRQEEEEEEEEEEVSEKGKRKAGGSKQQTEKPESEDEWERTERERLQDLE
ERDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLA
KREREKLEDLEAELADEEFLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATN
RYHMPEETRGQPARAADLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLV
LEEEETIEFVRATQLQGDEEPSAPPAPTQAQQKESIQAVRRSLPVFPFREELVAAIANHQ
VLIIEGETGSGKTTQIPQYLFEEGYTQKGMKIACTQPRRVAAMSVAARVAREMGVKLGNE
VGYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLI
KDVARFRPELKVLVASATLDTARFSTFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACV
VSVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQ
ARIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSK
ASANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLM
HFDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYGC
SEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQ
WCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTR
SGYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY
KAKELEDPHAKKMPKKIGKTREELG
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggcggggctggagcgctgggtgcaggacgagctgcactcggtactgggg
ctgagcgagcggcacgtggcccaattcctaatcggtaccgcgcagcgctgcgcctcggcc
gaggagttcgtgcagcgcctgcgagacaccgataccctggacctcagtgggccggcccgg
gacttcgccctgagactctggaataaggtcccacggaaggcagtggtggaaaaaccagct
cgggcagctgagcgagaggcccgagccctgctggagaagaaccgatcttatagattgctg
gaggacagtgaggagagcagtgaggagaccataggcaggactgggagcaatctgcagaag
aagcggaaaaaacggaaacacttgaggaagaaacgtcaggaggaggaggaagaagaggag
gaggaagaggtttctgagaaaggaaagaggaaggcaggggggagtaaacagcagacggag
aagccagagtcagaggacgagtgggagcggacagagcgagaacgtcttcaggacctggag
gaacgcgatgcctttgccgagcgagttcggcagcgggacaaggatcggacacgcaatgtc
ctggagcggtcagacaagaaggcttatgaagaggctcagaagcgcctcaagatggccgag
gaagaccggaaagccatggtccccgagctgaggaagaagtcccgccgagagtacctggcc
aagcgggaacgcgagaagctggaggacctggaggccgagctggcggacgaggagttcctc
tttggggatgtggagctgagccgacatgagcggcgggagctcaaatacaagcgacgtgtg
cgggatctggcccgggagtaccgggcagctggggagcaggagaagctggaggccaccaat
cgctaccacatgcctgaggagacccgaggacagccagcgcgagccgcggatctggtggag
gaggagtccggcgcccccggggaggaacagcggcgctgggaggaggcccggctgggggca
gcgtccttgaagtttggggcccgagatgctgcctcccaggagcccaagtatcagctggtg
ctggaggaagaggagaccatcgagtttgtccgggccactcagctccagggtgatgaggag
ccatcagctccacccgctccaacccaggcccagcagaaggagtccatccaggccgtccgc
cgcagcctcccggtgttcccattccgcgaggagctcgtggccgctattgctaatcatcag
gtcctcatcattgaaggcgagacaggctcgggcaagaccacccagatcccacagtacctc
tttgaggagggttacacacagaagggtatgaagattgcctgcacccagccccggagagtg
gctgccatgagcgtggctgcccgagtggcccgggagatgggggtgaagcttgggaatgag
gttggttacagtatccgctttgaggactgcacatcagagcgaactgtgctgcggtacatg
acagacgggatgcttctccgggagttcctctctgagcctgaccttgcgagttacagtgtg
gtgatggtggatgaggctcatgaacggacgctgcacacagacattctctttgggttaatc
aaggatgttgctcggttccgacctgagctcaaggtcctggtggcttcggccacactggac
actgcccgcttttccactttcttcgatgacgcccccgtcttccgaatccctggccgcagg
tttccggttgacatcttctataccaaggctccggaggcggactacctggaagcctgtgtg
gtgtctgtgctgcagatccacgtgacccagccccctggggatatcctggtgttcctgaca
ggacaggaggagatcgaggctgcctgtgagatgctccaggatcgctgtcgccgcctgggc
tccaaaatccgggagctcctggtgctgcctatttatgccaacctgccttccgacatgcag
gcgcggatcttccagcccacgccccctggggcacggaaggtggttgtggcaacgaatatc
gccgagacctctctcaccattgagggcatcatttacgtgctggatccggggttctgtaag
cagaagagctacaacccgcgcacgggcatggaatcactcactgtcacaccctgcagcaag
gcctcagccaatcagcgagctggtcgggcaggtcgggtggctgcagggaagtgcttccgc
ctgtataccgcctgggcctatcagcacgagctggaggaaaccacggtgcctgagatccag
aggaccagcctcggcaatgtcgtgttgctgctcaagagcttagggatccatgacctaatg
cactttgatttcttggaccctccgccgtatgagaccctgctgctggctttggagcagctg
tatgcactgggagccctcaaccaccttggggagctcaccacgtctggtcgaaagatggca
gaactgccggtggaccccatgctgtctaaaatgatcctggcctctgagaagtacggctgt
tcggaggagatcctgacagtggccgccatgctctctgtcaacaactccattttctaccga
cccaaggacaaggttgtccatgccgacaatgctcgtgtcaacttcttcctccctggtggg
gaccacctggttctgctgaatgtttatacacagtgggctgagagtggttactcttcccag
tggtgctatgagaactttgtacagtttagatcgatgcgccgagcccgggatgtgcgggaa
cagctggaggggctcctggaacgcgtggaagttggcctcagttcctgccagggggactat
atccgtgtccgcaaggccatcactgccggctacttttaccacacagcacggctgactcgt
agcggctaccgcacagtgaaacagcagcagacggtgttcattcatcccaattcttccctc
tttgaggaacagccacgctggctgctctaccacgaacttgtcttgaccaccaaggagttc
atgagacaggtattggagattgaaagcagttggcttctggaggtggctccccactattac
aaggccaaggagctagaagatccccatgccaagaaaatgcccaaaaaaataggcaagaca
cgagaagagctagggtag
DBGET
integrated database retrieval system
