Vicugna pacos (alpaca): 102535664
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Entry
102535664 CDS
T08098
Symbol
CHD9
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vpc03036
]
102535664 (CHD9)
Chromosome and associated proteins [BR:
vpc03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
102535664 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
102535664
NCBI-ProteinID:
XP_031536447
UniProt:
A0A6J3ATG1
LinkDB
All DBs
Position
9
AA seq
2922 aa
AA seq
DB search
MTDPMMDFFDEANLFGETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQGTP
THQKLTDYEQLNQFDSMKFHQVNQPFGSPAEHVLSPHSQFNCSPIHPQNQPNGLFPDVAD
GSPMWGHQTATSISNQNGSPFHQQGHSHSMHQTKSFVAHHDFALFQANEQQTQCTSLRSQ
QNRNNLNPGQNSLSQSKNFMDVNVSGPHRVSVNHPPQINNASTSQQSLSMQQFSQTSNPS
VHFLKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHVSPNNLLQSSAVLAPNHT
SQTLSDFTGSNSFSPHRGIKQESTQHMLNPNTSLNSNNFQMLHSSHPQGSYSNSKLSPVH
MNFPDPVDSGTQMGHFNDHVEANGFSSLEENLLHQVESQTEPFTGLDPEDLLQEGLLPQF
DESAFGQDNSSHVLDHDLDRQFTSHLVTRPSDMAQTQLHSQARSWHSSLSNHQHLHDRNR
LCLQRQPPSSKKSDGSGTYTKLQNTQVRIMSERKQRKKVESESKQEKANRIISEAIAKAK
ERGERNIPRVMSPENFPSASIEGKDEKKGRRMKSKPKDKESKKTKTCSKLKEKTKIGKLI
ITLGKKQKRKKESSDEISDVEQMPQHTFKEEDSQKRRSNRQIKRKKYAEDAEGKQSEEEV
KGSMKIKKNSAPLPGEQPLQLFVENPSEEDAAIVDKILSSRIIKKEISPGVMIDTEEFFV
KYKNYSYLHCEWATEQQLLKDKRIQQKIKRFKLRQAQRAHFFADMEEEPFNPDYVEVDRV
LEVSFCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQASRPDTRHLD
RPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITF
LYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDS
QGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNL
EHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGDLKTEEQVQKLQAILKPMM
LRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMM
ELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGG
HKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT
RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFD
RASLKLGLDKAVXXXXXXXXXXXXXXXXXXXXXLQSMSGRDSNVGGIQQLSKKEIEDLLR
RGAYGAIMEEEDEGSKFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISL
DDPNFWQKWAKKAEIDIDAISGRNSLVIDTPRIRKQTRPFSATKDELAELSEAESEGDEK
PKLRRPCERSNGYGRTECFRVEKNLLVYGWGRWREILSHGRFKRQLNEHDVEIICRALLA
YCLIHYRGDEKIKGFIWDLITPTEDGQTRELQNHLGLSAPVPRGRKGKKVKTQTSSFDIQ
KAEWLRKYNPEQLLQDEGYKKHIKHHCNKVLLRVRMLYYLKQEVIGNECQKVFDGVDASD
IDVWVPEPDHSEVPAEWWDFDADKSLLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKA
VAAEQRANDYMDGDVEDPEYKPAPALFKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPT
QSALTTRLRRLITAYQRTNKNRQIQQIQPTFSVPASVMQPLYEEATLNPKMAAKIERQQR
WTRREEADFYRVVSTFGVVFDPDRGQFDWTKFRAMARLHKKTDDSLEKYLYAFMSMCRRV
CRLPSKEELVDPNIFIQPITEERASRTLYRIELLRKVREQALRHPQLFERLKLCHPNPDL
PVWWECGPHDRDLLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQSKMAHSRTSTPLLQ
QYQVALSASPLTSLPRLLDPKGIILEDMKVKSENLKEEPQSSEEESMSSEETRTLIKSEP
VSPKNGVLPQAPGDQKSGGKSETDRRMVAARTEPLTPNPASKKQRVHKRGSESSSDSDSD
SERSSCSSRSSSSSSSSSSCSRSRSGSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEES
DSEEEEVQKREGAPHVKAYDEESVASLSTTQDETQDSFQMNNGTPESAYILQGGYMLAAS
YWPKDRVMINRLDSICQTVLKGKWPSARRSYDANTVASFYTTKLLDSSGAASEYSEPSVP
TPPGAGVKEEHDQSAQMSKVKKHVREKEFTVKIKDEGGLKLTFQKQGLAQRRPLDSEDGA
LGQQQYLTRLRELQGASETSLASFPKSMPVSGTPIQSTLGANGVILDNQPIVKKRRGRRK
NVEGVDILFFNRNKPPNNVTLGLTTSQISAGINPTLSYSQPQGIPDTESPVPVINLKDGT
RLAGDDAPKRKDLEKWLKEHPGYVEDLGAFIPRMQLHEGRPKQKRHRCRNPNKLDVNSLT
GEERVQLINRRNARKVGGAFAPPLKDLCRFLKENSEYGVAPEWGDVVKQSGFLPESMYER
ILTGPVVREEVSRRGRRPKSGIAKATAAAAAATATSISGNPLLANGLLPGVDLPTLQALQ
QNLQNLQSLQVTAGLMGMPAGLSSGGEAKNVAAMFPMLLSGMTGLPNLLGMGGLLTKPTE
SGTEEKKGNDSKELEGKKERTESQNSENGGENSVSSSPSTSSTAALNTAAAANPLALNPL
LLSNILYPGMLLTPGLNLHIPTLSQSNTFDVQKNKNSDLGSSKSVEVKEEDSRVRDQEDK
GGTEPSPLNENSTDEGSEKADASSGSDSTASSSEDSDSSNED
NT seq
8769 nt
NT seq
+upstream
nt +downstream
nt
atgacagatccaatgatggacttttttgatgaagccaatctttttggtgagaccttagaa
ggtttgtcagatgatgcatttgtacaaccagggcctgtttcactagttgatgaattgaac
ttgggtgcagaatttgaacctttgcacatagactcactgaaccatgtacaaggtactcca
acacatcagaagctgactgattatgaacagttaaatcagtttgattcaatgaagtttcac
caagttaatcagccatttggtagcccagctgaacatgtgttatctccacactctcagttt
aattgttctccgatccacccccagaatcagcccaatggtttgtttccagatgtagcagac
ggcagtccaatgtggggccatcagacagctactagcatttcaaatcaaaatggatctcct
tttcaccaacaaggacattctcactctatgcatcaaactaaaagctttgtggcacaccat
gactttgccttatttcaggccaatgaacaacaaacacagtgcacttcactccgctcgcaa
caaaacagaaataatcttaacccagggcaaaattctcttagccagtctaaaaattttatg
gatgttaacgtttctggtccacacagagtcagtgttaaccaccccccacaaattaataat
gcatctacttcacaacaatccctttcgatgcagcagttttctcaaacgtcaaatccttca
gtgcactttctcaagtgtagcagtcatcaagaaggaaattttaatggaccttccccaaat
atgacttcttgttctgtcagtaattcacaacagttttcttcacattattccttttctagt
aatcatgtgtcaccaaataatcttcttcagtcctctgcagttcttgcacctaatcataca
agtcaaactttatctgattttactgggagtaattccttttcacctcataggggaatcaag
caagaatctactcagcatatgctgaatcccaatacatcactgaattcaaataatttccaa
atgttgcattcatcacatcctcagggtagttacagcaattcaaaattatctcctgtgcac
atgaacttcccagatcctgttgactcaggaactcaaatgggccatttcaatgatcatgta
gaagctaatggcttttcatctttagaagagaatttacttcatcaagtggaatctcaaact
gagccattcacaggacttgacccagaagacctccttcaggagggtctccttccccagttt
gatgagtcagcatttgggcaagataattcaagtcacgttttagatcacgaccttgatcgg
cagtttacttcacatcttgtaacacggccttctgatatggctcaaactcagttgcatagt
caagcgaggagttggcattcatcactttctaatcatcagcatttacatgacagaaatcgc
ctgtgtttacagcgacagcctccatcttccaagaagagtgatggttctgggacatatact
aagttgcagaatacccaggtgaggatcatgtccgagaggaagcagagaaaaaaggtggaa
tcagaaagcaagcaagaaaaggctaatcgtataatatcagaggccatagcaaaagcaaag
gagcgtggggaacgcaatattccacgagtaatgagccctgaaaactttcctagtgcttca
attgaaggaaaagatgaaaagaaaggtagaaggatgaaatccaagccaaaggacaaagag
agcaaaaaaacaaaaacttgttctaagttaaaagagaagacaaaaattggcaaactcatt
attacattgggtaagaaacaaaaaaggaaaaaggaatcttctgatgaaatatctgatgtg
gagcagatgccacagcatacattcaaagaggaagactctcaaaaaagaagatcaaatcga
caaattaaaaggaaaaaatatgcagaagatgcagaagggaaacaatctgaagaagaggtt
aaaggctccatgaaaataaaaaagaattcagctcctttacctggtgaacagcctttacag
ttatttgtggagaatccgagtgaagaagatgctgcaattgtggacaaaatactatcttct
agaattataaaaaaggaaatatcacctggagtgatgattgatacagaagaattttttgta
aaatacaagaattactcctatcttcactgtgagtgggccacagaacagcagcttctgaaa
gataaaaggatccagcagaaaatcaaacgattcaaattgagacaagcacaaagagcacat
ttttttgcagatatggaagaagaaccatttaacccagactacgttgaagtagacagagtg
ttagaagtctctttttgtgaagataaagataccggtgagcctgttatttactacttagtc
aagtggtgctcattaccatatgaagatagcacttgggaactaaaagaagatgtagatctt
gcaaaaatagaagagtttgaacaattgcaagcttcacggcctgacacaagacatttggat
cgtcctccttctaatatctggaaaaaaattgatcaatccagggattataaaaatggcaat
caactcagggaatatcaactggaaggactcaactggctcttgttcaattggtacaataga
cgaaactgcattttagcagatgaaatgggtcttggcaaaaccattcaatcaattacattc
ctctacgaaatccttctgactggtataagaggacctttcctgattattgctccactttct
actattgcaaactgggagagagaatttcgtacgtggactgatattaatgttgtggtttat
catgggagcctgattagcagacagatgatacagcaatatgagatgtacttcagggactca
caggggcgtatcattcgaggagcttacagattccaagccatcatcactacttttgaaatg
attcttggaggctgtggagagcttaatgcaattgaatggcgatgtgtgattattgatgaa
gcacataggttaaaaaataaaaattgcaaacttctagaaggactgaaactcatgaatctg
gaacacaaggtgcttttgactggcacacctctccaaaatacagttgaagaactgttcagt
cttcttcactttctagaacccttaaggtttccttctgaatcaacatttatgcaagaattt
ggggatctgaaaacagaggaacaggtgcaaaaacttcaggccatcctgaaaccaatgatg
ttgagacgattgaaagaagacgtggaaaagaagttggcacctaaagaagaaaccatcatt
gaagtagaactcactaacattcaaaagaaatactaccgggctattttggagaagaacttt
tcgtttttatctaaaggagcagggcagactaatgtccctaacttggtcaataccatgatg
gagctcaggaagtgctgtaatcacccatatcttatcaaaggtgctgaggagaaaatactt
ggggaatttagagatacatataatccagctgcttctgattttcatcttcaagcaatgatc
cagtctgctggcaaattggttcttattgataaattgcttcccaaaatgaaagcaggaggt
cacaaagtgctcatcttctctcagatggtacgctgccttgatatcctagaggactatctt
atacataaaagatatttatatgagcgaattgatggaagagtcagagggaaccttcgacaa
gctgctatagatagattcagtaaacctgattcagatcgatttgtctttcttctgtgtacc
cgagctggtgggttgggcatcaacttaactgcagctgacacttgtataatttttgattct
gattggaatcctcaaaatgaccttcaggcccaagcccgttgccacagaatcggtcagaat
aaagcagttaaggtctaccgactagtaactcgtaactcatatgagagagagatgtttgac
cgagccagtctgaaactgggtctagataaggctgtnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttacagagcatgagtggaaga
gatagtaatgttggtgggattcaacagctttccaaaaaggaaatagaagatctgcttcga
agaggtgcttatggtgccattatggaagaagaagatgagggctctaaattctgtgaagaa
gatatcgatcagattttactacgtcgtacaaaaaccattacaattgagtcagaaggacgt
gggtcaacatttgccaaggcaagttttgtggcatctggaaacagaacagatatttcctta
gatgatcccaacttctggcaaaaatgggcaaaaaaggcagaaatagatatagatgccatc
agtggtagaaacagcttggttattgatactccaagaattaggaagcaaacaagacccttt
agcgccacaaaagatgagttggctgaattatctgaagccgaaagtgaaggagatgaaaaa
cccaaactccggagaccttgtgagcgttcaaatggctatggaagaactgaatgctttcga
gtagagaaaaatctgctagtttatggatggggccgatggagagagattctatcacatggc
cgttttaaaaggcagctaaatgagcatgatgtagaaataatttgccgagcgctattagca
tattgccttattcattatcgaggagatgagaaaattaaaggcttcatatgggatctcatt
actccaactgaagatgggcagacacgagagctacaaaatcatctaggcctgtcagctcct
gtacccagaggtcgaaaagggaagaaagtaaagacacaaacaagctcatttgatatacag
aaagcagaatggctacgtaaatacaatccagagcagctgcttcaagatgaaggctacaaa
aagcatataaaacaccactgtaataaagttttgcttcgtgtaagaatgctgtattatcta
aaacaagaagtcattggaaatgagtgtcagaaagtatttgatggagttgatgcgagtgac
attgatgtttgggtcccagaaccagaccactcagaagttcctgctgaatggtgggatttt
gatgctgataagtcactccttataggagtttttaagcatggttatgaaaaatataacact
atccgagcagacccagcattatgctttttggaaagagtgggaaaacctgatgagaaagca
gttgctgcagaacagagggcgaatgattatatggatggggatgtggaagatccagaatac
aaacctgccccagctctctttaaagacgatatagaggatgatgtttcctcacctggagat
cttgttatagcagatggagatggtcaaatgatggagggtgataaaatttattggcctact
cagtcagctttaaccacacgtttaaggcggctcatcactgcgtatcagcgtactaataaa
aacagacagatccagcaaatacagcctactttctcagtgcctgccagtgtaatgcagcct
ctttatgaagaagccactcttaatcccaaaatggcagccaagatagaaagacagcagaga
tggacaagaagagaagaagctgacttttatagagttgtatctacatttggagtggtattt
gatcctgacagaggccagtttgattggacaaaatttagagctatggctaggctacataag
aaaactgatgacagtctggagaaatacttgtatgcattcatgtctatgtgtcggagggtt
tgtcgtcttccttccaaagaagaattggtggatccaaatatttttatccagccaatcaca
gaagaacgtgcttctaggactttgtatcgcatcgaacttctaaggaaagtaagggaacag
gccctccgacatccacagctgtttgaacgcttgaagctttgccatccgaatccagactta
ccagtctggtgggaatgtggccctcatgatagggacttgctcattggagctgctaaacac
ggggtgagccgaacagactatcacattcttcgtgaccctgaactctcatttatggcagct
caaaggaactacagtcaaagtaagatggctcattcgaggacttctaccccacttttacag
caataccaagtagcactttctgcttctcctcttacctctctacctaggctcctagatcct
aaaggtattattttagaggatatgaaagttaaaagtgaaaaccttaaagaggagcctcag
tcttctgaagaggaatctatgtcttctgaggaaaccaggacactaataaagtctgagcct
gtgagtccaaagaatggtgttttaccccaggctcctggagaccagaaatctggtggaaaa
agtgaaacagacagacgcatggttgcagccagaacagagcctctaactccaaacccagct
tctaagaaacagcgagtccacaaaagaggatcagagtctagttctgattctgactctgat
tctgagagatcatcctgttcttccagatcgtcttcttcctcatcttcctcctcctcttgt
tcccgctctcgatcaggctctagctcttcttcttcctcctcttgttcttcagcatcatct
tcatcctcatcctcgtcctcctcttcctcatcatcctcttcatcttcgtcagaagaaagt
gacagtgaagaagaggaagtccaaaagcgagaaggtgcccctcatgtgaaagcctatgat
gaagaaagtgttgcatcactaagcactacccaggatgagacccaggatagtttccagatg
aacaatgggacaccagagtccgcttacatcctgcaaggtggatacatgctggcagcttcg
tattggccaaaggatcgtgtgatgatcaaccggttggacagtatttgtcaaacagttctg
aaagggaagtggccttcagctagaagaagttacgatgccaatacagtggcttctttctat
accacaaaactgctggacagctctggtgcagcttcagaatacagcgagcccagcgttccc
actcctccaggtgctggtgttaaagaagaacatgatcagtcagcacagatgtcaaaggtg
aagaagcatgtacgagaaaaggagtttacagtgaaaatcaaagacgaaggtggtttgaag
ttgacatttcagaagcaagggcttgctcagagaaggccattggacagtgaggatggagcc
ctggggcaacagcagtacctcactcgactccgagagcttcaaggtgcgtcagagaccagc
ctcgccagttttccaaaatccatgccagtatcaggtactcccattcaatcaacccttggt
gccaatggagttatattagacaaccagcctatagtcaaaaaaaggcggggaaggaggaag
aatgtagaaggtgttgacatcctcttttttaacagaaataaaccacctaataatgttact
ttaggcttaaccacctcacagatttctgcagggataaatccaacactgtcctatagtcaa
cctcaaggaattcctgatacagaaagtccagttccagttattaatcttaaagatgggaca
agacttgcaggcgatgatgcaccgaagagaaaggatttggaaaaatggcttaaggagcac
ccaggttatgtggaagatttaggagcttttattcctcgaatgcagctccatgaggggaga
cccaaacaaaaaaggcatcgttgcagaaatcccaataaactagatgttaatagtctcact
ggggaagaacgtgttcagctgattaacagaagaaatgccagaaaggttggaggtgcattt
gctccccctttgaaggatttatgtcgattcctgaaagaaaattcagaatatggagtagct
cctgaatggggagatgttgttaagcagtctggatttcttccagaaagcatgtatgaacgt
attctcactggtcccgttgtgagagaggaagtaagcaggcgagggagacggcctaaaagt
ggaattgcgaaggccacagcagcagcagcggctgcaactgccaccagtatttcaggcaat
cctttgttagccaatggattacttccaggtgtggacctcccaactcttcaggccttacaa
caaaacctacaaaacctgcagtcgctgcaagtaaccgcagggctgatgggaatgcctgcc
ggcctttcttctggaggagaagctaaaaacgtggccgccatgttccccatgctgctgtca
ggaatgacaggattgccaaatctgttgggcatggggggactcctgacaaagcctacagaa
tctggaacagaagaaaaaaagggaaatgactctaaggagctagaaggaaaaaaagaaagg
acagagagccaaaattcagaaaatggtggagaaaactctgtgtcaagttctccttcaaca
tcctctactgctgcattaaatacagctgcagctgccaacccgttagctcttaacccacta
ttactatctaatatactttatccagggatgcttctcactccaggccttaatcttcatatt
ccaactttgtcccagtccaatacttttgatgtacagaaaaacaaaaacagtgacttaggc
tcgtctaagtctgtagaagtaaaggaagaagattccagagttagagatcaggaagacaaa
gggggaactgaaccaagtcctctcaatgaaaacagcacagatgagggttcagagaaagcc
gatgcttcatctggatctgatagtacagcatcatcgtccgaggattcagattctagtaat
gaagactga
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integrated database retrieval system
