Vicugna pacos (alpaca): 102536005 Help Entry 102536005         CDS       T08098                                  Symbol SYMPK Name (RefSeq) LOW QUALITY PROTEIN: symplekin   KO K06100   symplekin Organism vpc  Vicugna pacos (alpaca) Pathway vpc03015   mRNA surveillance pathway vpc04530   Tight junction Brite KEGG Orthology (KO) [BR:vpc00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     102536005 (SYMPK)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04530 Tight junction     102536005 (SYMPK)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:vpc03021]     102536005 (SYMPK)    03019 Messenger RNA biogenesis [BR:vpc03019]     102536005 (SYMPK) Transcription machinery [BR:vpc03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      102536005 (SYMPK) Messenger RNA biogenesis [BR:vpc03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      102536005 (SYMPK)     U7-dependent histone pre-mRNA processing factors      102536005 (SYMPK) SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N PDS5 Cnd1 Motif Other DBs NCBI-GeneID:  102536005 NCBI-ProteinID:  XP_006208603 UniProt:  A0A6I9IBM3 LinkDB All DBs Position 11 AA seq 1274 aa AA seqDB search MAGSSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSGKDARKRPRDDSDSTLKKM KLESNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV YLPEVMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK VVKPESVLIKRRLSAQGQAISVVGSLSSMSALEEEAPQAKRRPEPIIPVTQPRLAGAGGR KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSVL KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGATGTLDKYEDCLIRLLSGLQEKPDQK DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSAKCDMK SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR SFTPHQQAHIPNSIMTILEASGKQEPETKETPAGPLEEDDLEPLALAPXPGPRPPQDLIG LRLAQEKALKRQLEEEQKLKPGGVGAPSTSSSLSSSSARPGPPQPEEAIDFREEGPECET PAIFISMDDDSGLTDAALLDSSLEGPLPKEVAAGGLISKEERSPQTLTPAGEDTLKTPSP TAEEAGEPETKGNS NT seq 3825 nt NT seq  +upstreamnt  +downstreamnt atggcaggcagcagtggggacagcgtcacccgccggagcgtggcatcacagtttttcaca caagaggagggaccgggcattgatggcatgaccacctcagagagagtggtggatctcctg aaccaggcagcactgatcaccaatgattcaaagatcacggtgctcaaacaggtccaggaa ctgatcatcaacaaagatcccacactactggacaacttcctggatgagatcatcgcattc caagcagacaagtcgattgaagtgcgcaaatttgtcatcggcttcattgaggaggcatgc aagcgagacattgagttgctgctgaaactgattgcgaacctcaacatgcttttaagagat gagaatgtgaatgtggtgaagaaggccatcctcaccatgacccagctctacaaggtggcc ctgcagtggatggtgaagtcacgggtgatcagtgagctccaggaggcctgctgggacatg gtgtctgccatggctggggacatcatcctgctgttggactctgacaatgacggcatccgt acccacgccatcaagtttgtggagggcctcatcgtcaccctgtcaccccgaatggctgac tcggaagtgcctcgacgccaggagcatgacatcagcctggaccgcatccctcgtgaccat ccctacatccagtacaatgtgctgtgggaagaaggcaaggcagccttagagcagctgctc aagttcatggtgcaccccgctatctcctccatcaacctgaccacagccctgggctccctc gccaatattgcccgccagaggcccatgtttatgtctgaggtgattcaggcttacgaaacc ctgcacgccaacctgcccccaacgctggccaaatctcaggtgagcagcgtgcgtaagaac ctcaagttgcacttgttgagtgtgctgaagcacccagcctccttggagttccaggctcag atcaccaccctgctggtagacctgggcacacctcaggctgagatcgcccgcaatatgccc agtggcaaggatgcccgcaagcggccccgagacgactcagattccacgctcaagaagatg aagctggagtccaacctgggggaagacgacgaggacaaggacttggagccaggcccctca gggacctcgaaggcctctgcccagatctccggtcagtcagacacagacatcacagccgag ttcctacagcctctgctgacgcccgacaacgtggccaatctggtcctcatcagcatggtg tacctgcctgaggtcatgcccgcctccttccaagccatctataccccagtggagtcagca ggcactgaagcccagatcaaacacttggctcggctcatggccacacaaatgacagccgca ggactggggccaggcgtggagcagaccaaacagtgcaaagaggagcccaaggaggagaag gtggtgaagccggaaagtgtcctgatcaagcgacgcctgtcagcccagggccaggcgatc tcggtggtgggctccctgagttccatgtccgctctggaggaggaggcaccccaggccaag aggaggccagagcccatcatccctgtcacgcagccccggctggcaggtgccggagggcgt aagaaaatcttccgtctgagcgatgtgctgaagcccctgactgacgcccaggttgaggcc atgaagctgggcgctgtgaagcggatcctacgggctgagaaggctgtggcgtgcagcggg gctgcccaggtgcgcataaagatcctggctagcctggtgactcagttcgactcggtcctg aaggctgaggtcctgtccttcatcctggaggatgtgcgggcccgcctggacctggccttc gcctggctctaccaggagtacaacgcctacctagcagctggtgccacgggcaccctggac aagtatgaagactgcctcatccgcctgctctccggcctgcaggagaagccagaccagaag gatgggatcttcaccaaggttgtactagaggcaccactgatcactgagagtgccttggag gtgattcgcaagtactgcgaggatgagagtcgcacctacctgggcatgtccactcttcga gacctgatcttcaagcgcccgtcccgccagttccagtacctgcatgttctgctagacctc agctcccatgagaaggacaaggtgcgttcccaagctttgctgttcatcaagcgcatgtac gagaaggaacagctgcgagagtatgtggagaaatttgcccttaactacctacagctcttg gtccaccccaatccaccatctgtgctgtttggagccgacaaggacacagaggtggcagcg ccctggactgaggagacagtgaagcagtgtttgtacctctacctggccctcctgcctcag aaccacaagctgatccacgagctggcagccgtgtacactgaagccatcgctgacatcaag aggacagtgctgagggtcatcgaacagccgatccgaggaatgggcatgaactcgccagag ctgctcttgctggtggaaaactgtcccaagggggcagagacactggtcacacgatgtctg cacagcctcacggacaaagtcccaccctccccagagctggtgaagcgggtcagggatctc taccacaagcgactgccagacgtccgcttcctcatccctgtgctcaatgggctggaaaag aaagaagtgatccaggccctgccaaagctcatcaaactcaaccccatagtggtgaaagag gtcttcaaccgcctgctgggcacccagcatggtgaagggaactcggccttgtcccccctg aaccctggagagcttctgatcgcgttacacaacattgactcggcaaagtgtgacatgaag tccatcatcaaagccaccaacctgtgctttgcggagcggaacgtgtacacatcggaggtg ctggccgtggtgatgcagcagctgatggagcagagtcccctgcccatgctgctcatgagg accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctg tcccgcctcatcatgaagcaggtgtggaagtatcccaaggtgtgggagggcttcatcaaa tgctgtcagcgcaccaagccccagagcttccaggtcatcctgcagctcccaccccagcag ctgggtgccgtctttgacaagtgcccagagctccgggagcccctgctggcccacgtccgc tccttcactccccaccagcaagcacacatccccaactccatcatgaccatcctggaggcc agcggcaagcaggagccagagactaaggaaacacctgccgggcccctggaagaggatgac ttagagcccctggctctggcaccancccccggcccccggccccctcaagacctgatcggc ctgcggctggcccaggagaaggccttaaagcggcagctggaggaggaacagaagctgaag cctgggggtgtgggagccccctccacgtcctcctcgttgtcctcttcctcagcccggcca ggccctcctcagcccgaggaagccattgatttccgggaggaggggcctgagtgtgagacc ccggccatttttatcagcatggatgatgactcggggctgacggatgctgcactgctggac tctagtcttgagggacccctacctaaggaagtggcagcgggcggattgatttcaaaggag gagcggagcccccagaccctcacccctgccggagaagacaccctaaagacccccagcccc accgcggaggaagccggggaacctgagaccaaggggaacagctga

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