Vicugna pacos (alpaca): 102537474
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Entry
102537474 CDS
T08098
Name
(RefSeq) lipoxygenase homology domain-containing protein 1
KO
K19538
retinitis pigmentosa 1
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
vpc03037
]
102537474
04812 Cytoskeleton proteins [BR:
vpc04812
]
102537474
Cilium and associated proteins [BR:
vpc03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
102537474
Cytoskeleton proteins [BR:
vpc04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
102537474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PLAT
DCX
DUF7755
FGF
AbfB
Motif
Other DBs
NCBI-GeneID:
102537474
NCBI-ProteinID:
XP_031548075
UniProt:
A0A6J3BLW7
LinkDB
All DBs
Position
29
AA seq
1308 aa
AA seq
DB search
MSGTLSTSFAMIRRTSSEGQAPSSRQLRVAQPVVAKRISFYKSGDPQFAGVRVVVNPRSF
KTFDALLDNLSGKVPLPFGVRNISTPRGRHSITRLEELEDGQSYLCSHGRKVQPVDLDKA
RRRPRPWLSSRALSVPSLQAVILSSGAVVAAGREPFKPGNYDLQKYLLPARLPGISHRVH
PKGNARSESRKSGNWKVSIVTSDLPDAGTSSQIYIILYGRHRSSAPIYLCGAHGTRFQDG
HEDVFTITVGDIGTLFKIRVGHTNSGLSPSWHCKEIKLWNVNSGKQFYMPVQRWMARDQE
DGEICRELPVLNKGQPILPVTVYEVRVATGALWNAGTAANVYISVWGEKGDTGSRQLFRS
KSSFNFLRGQIDTFSLEAVHLGNLYKIVIGHDGLGPGNGWFLDDVVIKDPTTNREYGFFC
HRWLDQGEGDGKIVRELYARDNAVIYARQKLEVSRKEMWAAESWKFRKGNTLQFYSRRTG
GFVRLHPDGTADAAGEKSDKHSLFDVIFNKGNICIFQSHEMRHLSLALENGSVTGMASGG
ASTEMRVLYQPNRCALLESVLVPGHTITFDRRGKIADESSAGYADLSGEFVVLVKGVFLP
GAVVLLATSPCQALCLQPDGSCTGLGKLSEQSYWKVHKISSGICMLESVKNAQMFLRIED
GQCDGTGTGGTDCHFKIKKNLENACVSLESVKSPGRFVGLQSDGQAAPAVYTKNGDVFFY
PRVIKFGRENPSGMSAPPSQEEERIVKSKNQQEMPAEPEAGGVAPSSTAGGARPSRSREP
LPSEDEWEVSVLTGSTGTRARVTLWVYGDEGVAGPVSLSKDGLERLFLPGQEDAFRVEVR
HVGKIYKIRIGHDGTEWSLQRVTMQHTRSKKRLDFAANVWLSRIQAEGDIVCELPVVKGG
QAVFPLVRYLVDVHTGQLKQAGTESEVSLCLYGERGDSGLRLLYKSNMPVKFQRGQVDTF
QVEAVSLGKLQKVLLRCEAGDKSQYWYCDKVVVREPGTMSESVFTCERWLPFMSQGVIHS
EVELYLQEMQINHPPKRQEEADEGDWKVTVVTGDLENAGTTATVSLSVYGEARCSGPIIL
GSGKHHLFNPNSADIFKVNLKDIGDIYKVRVGHDNSGNDPRWYLEEIRLENIDTRELFCL
PVDSWIAEDENDGDTWKEMPVVGTSRAPLPVVLYVVHVCTGRRPGAETESRVFINLIGTR
GDSGARRLHRSKNNKVTFRRGQVDIFSIEAVSLGKLKKVLISHDGTGPGNGWFLESVVVK
SEEEDGGQEVLFPCNRWLDEYQDDGRTERELLADSGCGATGGTASAAS
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaacgctctccactagctttgccatgatccgtcggacttcttccgaaggtcag
gctccttcctctcgccagctgcgcgtcgctcagcctgtcgtggccaaaaggatcagcttc
tacaagagcggagacccgcagtttgcgggcgtccgggtggtggtgaacccccgctctttc
aagacgttcgatgctttgctggataacttgtcggggaaggtgcccctgccgttcggggtg
aggaacatcagcacccctcggggaaggcacagcatcacgcgcctggaggagctggaggac
ggccagtcgtacctgtgctcccacggcaggaaggtgcagccggtggacctggacaaggcc
cgccggcgcccgcggccatggctcagcagccgggccctcagcgttcccagtctccaggct
gtgatcctgagctctggagctgtggtggcagcaggaagggagccatttaaaccaggaaat
tatgacctccagaagtacttgcttcctgctagattaccagggatctctcatcgtgtgcat
cccaagggaaatgctaggtcagaaagcagaaagagtggcaactggaaggtttccatcgtc
accagtgacttgccagatgcagggaccagctcacagatttatattatactatatggacgg
cacaggagttcagcacccatatacctttgtggagcacatggaactcgatttcaggacggc
cacgaagacgtgtttaccatcacagttggagacattggaacactctttaagattcgtgtt
ggtcataccaactctggcctctccccttcctggcactgtaaagagataaaattgtggaac
gtgaattctggaaaacagttttatatgcctgttcaacggtggatggcacgagaccaagaa
gatggggaaatctgtcgagaattacctgttttaaacaaagggcagcccatccttccagtg
acagtgtatgaagtgcgtgtggcaacaggggcgctttggaatgctggaacagcagcaaat
gtctacatttctgtctggggggaaaagggggatacaggatccagacaactctttcgatcg
aagagctccttcaattttttaagaggacaaatcgacaccttctccctagaagctgtgcac
ctggggaatttgtacaagattgtcataggccacgatgggcttggaccaggaaatggctgg
tttctcgacgacgttgtgatcaaggaccccaccacaaaccgcgaatacggctttttctgc
cacaggtggctggatcagggggaaggtgatggcaaaattgtcagagagctgtatgccagg
gataatgctgtcatctatgcacggcagaagctagaagttagtagaaaagaaatgtgggct
gcagagagctggaagttcaggaagggaaacactcttcagttctacagcaggcggactgga
gggtttgtccgcctgcatccggacggcacagctgacgcagctggagagaagtcagacaaa
cacagtctctttgatgttattttcaacaaaggaaatatatgcattttccaaagtcatgaa
atgaggcatctttctctggctcttgaaaatggctctgtcactggaatggccagtggtgga
gcctccactgagatgcgggtgctttatcagcccaaccgctgtgcccttcttgagtcagtg
ctggttcctggtcacacgattacctttgatcgtcgcggcaaaatagcggatgagtcatca
gcaggctatgcagacctctcaggagagtttgtggttcttgtcaagggtgtgttcctgccc
ggcgctgtggttctgctcgctactagcccgtgccaggccctgtgtctgcagccggatggg
agctgcactggcttgggaaaactgtctgaacaatcctattggaaagtgcataaaatcagc
tctgggatttgcatgttggaaagtgtgaaaaatgcacaaatgtttctgaggattgaggat
ggccagtgtgatggaacgggcacaggaggtactgactgtcattttaaaattaagaagaac
ctggaaaatgcatgtgtcagcctggaatctgtgaagagcccggggcggttcgttggactg
cagtcagatggtcaggcagcaccagctgtttataccaagaatggggatgttttcttctac
ccacgcgtcatcaagtttggcagagaaaacccgtcgggtatgtctgcaccacccagccaa
gaggaggaaaggattgttaagtcaaaaaaccagcaagagatgcccgcagagcctgaggcc
ggaggtgttgcaccttcttccactgcaggaggagccaggccttcccgaagccgtgagcct
ctcccgtcggaagacgagtgggaggtgtcagtgctgacgggaagcaccgggactcgggcc
cgggtcacactctgggtgtacggggacgagggagtcgctggaccagtcagtctcagcaag
gacggcctggagcggctcttcctcccaggacaggaggacgccttccgggtcgaagtaaga
cacgttggaaagatatacaagataaggataggacacgatgggactgagtggagcctgcag
agggtgaccatgcagcacacgaggagcaagaagaggctagattttgcagcgaatgtgtgg
ctatcgcgaatccaagcagagggggacattgtctgcgagcttcctgtagtgaaaggcgga
caggctgtttttccactggtgagataccttgttgacgtccacactgggcagctgaagcaa
gcaggaacggagtcggaagtttccctgtgtctctacggggagaggggagactctggtctc
aggctgctgtacaaatccaacatgccagtgaagtttcaaagaggacaggtcgatacgttt
caagtagaagcagtgtcgctgggaaaactgcagaaggtgctgttgcgctgcgaggccggt
gacaagtcgcagtactggtactgcgacaaggtggtcgtcagggagccgggcaccatgtcc
gagtccgtcttcacctgcgagagatggcttccctttatgtctcagggcgtaattcactca
gaagttgaactttatcttcaagaaatgcaaataaaccatccacctaaaagacaagaggaa
gcagatgaaggagattggaaggtgacagttgtcaccggggatcttgaaaatgctggcacc
acggcaacagtatctctttctgtctatggagaagcaagatgttcaggtcccattattttg
ggatctgggaaacaccacctgtttaaccccaacagtgcagatatattcaaggtaaatctt
aaagatattggtgacatttataaagtacgtgttggacatgacaacagtggaaacgatccc
aggtggtatttggaagaaattagacttgaaaatatagacacgcgtgaactgttttgttta
cctgttgattcctggatagctgaggatgaaaatgacggagacacatggaaagaaatgccc
gttgtgggaaccagcagggcacctttgccagtggtgctttacgtggtccacgtgtgcact
ggcaggaggccgggtgcagagacagagtcccgcgtgtttatcaacctcattggcaccaga
ggagactcgggggctcgaaggcttcatcgatccaagaacaacaaggtcacgtttcggcgt
ggacaggttgatattttttccattgaggcagtgtctcttggaaaattgaagaaagttctg
attagtcatgatgggacaggtccaggtaatggatggtttctcgagagtgttgttgttaag
tctgaagaggaggatggtggacaagaggtgctgttcccgtgcaacaggtggctggatgag
taccaagacgacggcaggacggagcgagagctgcttgcggacagcggatgtggggcaacg
ggagggactgcgtctgccgcctcctga
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