Vicugna pacos (alpaca): 102538269
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Entry
102538269 CDS
T08098
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpc03000
]
102538269 (RC3H1)
04121 Ubiquitin system [BR:
vpc04121
]
102538269 (RC3H1)
Transcription factors [BR:
vpc03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
102538269 (RC3H1)
Ubiquitin system [BR:
vpc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102538269 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
102538269
NCBI-ProteinID:
XP_006211203
LinkDB
All DBs
Position
21
AA seq
1132 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEARKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILPDE
GAVDLPSRKPPALPNGIVSAGNPVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGASDLPPMPVTKPLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYPPPPQCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVNSQYGTQPQ
QYTAMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQMEGYYP
VAPHPTQIRPAYNREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPTFHQEEFLDEDFKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVAAAGSVEM
MNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMA
PQGAPTKSINISDYSPYGTHSGWGSSPYSPHQNIPSQGHFSERERLSMSEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLRGLEAVSNRLLLQREANTLAGQSQPPPPPPKWPGMIS
SEQLSLELHQVEREIGKRTRELSMENQCSLDTKSKLNTSKQAENGQPEPQNKVPAEDLTL
TFSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacagtggacggatttcctctcctgtccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccgtttgaccagaccactatcaacacagac
attgaactcctcccggtaaactcagcattgctgcagctagtgggtgctcaggtccctgag
cagcagcccattactttgtgtagtggagttgaagatacaaagcattatgaggaagccagg
aaatgtgtagaagaattagcactgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccgatgcagaggaagctggtgactctg
gtccactgccaactggtggaagaagaaggcaggattcgtgccatgagggcagctcgatct
ttaggtgaacgaacagttacagagctcattctccagcaccagaatcctcagcaactctct
tccaatctttgggcagcagtcagggctaggggctgccagttccttggaccagcaatgcag
gaggaagctctaaagctggttctcctggccttggaagatggttctgctttgtcaagaaaa
gtattggttctctttgtggtacaaaggttggagccacggtttcctcaagcctctaaaact
agcattgggcatgttgtccagctcctttatagagcctcttgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagttgaaagaagaatttagaacctacgaagctctgcgg
cgagaacatgactcccaaatagtgcagattgcgatggaagcaggcttacggattgcacca
gaccaatggtcctctttgctttatggagaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagtgttcaggaactaacaattgct
ctccagcggactggagatccagcaaacttgaaccgactaagaccccatttggagctatta
gcaaacattgaccctagcccagatgctcctcctcctacttgggaacagcttgaaaatggg
ctggttgctgtgcgtacagtggtgcatgggctggttgattatatccagaatcacagcaaa
aaaggagcagatcaacagcagcctccacagcatagcaaatacaaaacatacatgtgtcga
gacatgaagcagagaggaggatgccctcgaggggccagctgtacatttgcacactcacag
gaggaactggaaaaatttcgtaaaatgaacaaacgtttggttcccagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcagctatccttccggatgaa
ggtgcagtggatttgcccagcagaaagccccctgctctgccaaacggaattgtatcagca
gggaatccagtaacacagctgatcccacgagggacagaccccagctacgattctagtctg
aaaccaggaaaaatagatcacctgagcagtagtgcccctggatcacctcctgacctgcta
gaatctgtccctaagagtatttctgccttgcctgtgaatccacatcctgtacctccacga
ggggcgtcagacctgccccctatgcctgtcaccaaaccacttcagatggttccacgaggt
tctcagttatatccagcacaacaggcagatgtttattaccaggatcctcgaggagcggcc
ccaccatttgaaccagcaccttatcagcagggtatgtattatcctccaccaccacagtgt
gtgtctcgctttgtccgacctccaccatctgctcctgaacctggtcctccctacttggat
cattatccaccctacctgcaagatcgtgtagtaaactctcaatatggcacacagccacaa
cagtacacagctatgtacccaccacactatgatggccgtcgagtataccctgctcagtct
tacacaagagaggagattttccgagaaagtcctatacccattgagattccacctgcagca
gtaccatcctatgtaccagaatccagagaaagataccaacagatggaggggtactatccg
gtggctcctcatccaactcaaatcagacctgcgtacaacagagagcctccttatagccgg
cttcctcctcctccccagccccatcctagtctagatgagctacatcgaagacgaaaggaa
ataatggcccaactagaggaaaggaaggttatctctccacctccttttgcaccttcacca
acgttgcctcctaccttccatcaagaggaatttttggatgaagacttcaaggtagctggg
aaatacaaaggaaatgattatagccagtactcaccctggtcatgtgacaccatcggctcc
tacattggaaccaaagatgcaaaacccaaagatgttgcggcagcagggagtgtggaaatg
atgaatgtggagagtaaaggaatgagagaccagcgattggaccttcagagaagagcagca
gaaaccagtgatgatgatctcatcccgtttggagaccgaccaacagtatctcggtttggt
gccatctctcgaacttccaaaacaatatatcagggtgcaggcccaatgcaggctatggca
cctcagggagctcccacaaaatctattaacatttcagattatagtccatatggaacccac
agtggctggggaagttctccatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggagagattatctatgtcagaagtggccagtcatggaaaacctcttccatct
gctgagagggaacagctacgactagaattgcagcaactaaaccatcaaatcagccagcag
acccagctacgtggactagaggctgttagtaataggctgctgttgcagagggaggcgaac
accctggcaggccagtcacagcccccaccaccacctccaaaatggcctggaatgatctca
agtgagcagctgagcttggaactgcaccaggtggaaagggaaattgggaagagaacccgg
gagctgagtatggagaaccagtgttctctggacacgaaaagcaaattgaatacaagtaag
caagcagaaaatggacaaccagaaccacaaaataaggttccagctgaggaccttacattg
acattcagtgatgtgccgaatggatcagccttgacacaagagaatatcagcctcctatca
aacaagaccagctctctgaacctatcagaggaccctgagggaggaggggacaataatgac
tcccagagatcaggagttacacccagttctgctccctaa
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integrated database retrieval system
