Vicugna pacos (alpaca): 102538538
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Entry
102538538 CDS
T08098
Symbol
RAI1
Name
(RefSeq) LOW QUALITY PROTEIN: retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpc03000
]
102538538 (RAI1)
Transcription factors [BR:
vpc03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
102538538 (RAI1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
102538538
NCBI-ProteinID:
XP_031541813
UniProt:
A0A6J3B7V3
LinkDB
All DBs
Position
16
AA seq
1862 aa
AA seq
DB search
MQSFRERCGFHGKQQNYQQTSQEPSRLENCRQPGQAGLSCDRQRLLAKDYYNPQPYPGYE
GSAGTPASAARGTKGLPAQQALPGRPAFPGYNVQDGGPYPGRYSGEESLQAWGAPQPPPP
QPQPLPGGVGKYDENLLKKTAVPPGRQYPEQGAQLPFRTHSLHVQPQLPQPLAYPKLQRQ
KLQNDLASPLPFPQGGHFPQHSQSFPTSSTYSSPGQAGGQGAHSYKSCTAPSAQPHDRPL
TASSSLAPGPRVQNLHAYQSGRLSYDQQKQQQQALQSRHHAQESLHYQTLAKYQHYGQQG
PGFCQPDAAVRPPEQYYQTFSPSSGHSPARSVGRSPSYSSTPSPLMPNLENFPYNQQPLS
TGAFPAGLTDHSHFMPLLNPSPTDAASSVDAQAGNCKALQKNKLPETLLSDLSLQSLTAL
TSQVESMSTTVQQLLLSQAAAPQKKGVKHLASRTPEQHKSQHCSPEGSGYSAEPVGTPLS
EPLSSTPQSSHAEPPETDYLSGSEDPLERGFLYCGQARGSPARVNSSCKAKPESVSTCSV
TSPDDVSTKSDDSLXXXXXXXLAQEDLASEILGLQEAVGEKADKAWAEAPSLAKDACKPP
FSLENHSACLDSVAKAAWPRPGEPEALPGSLQLDKGGGAKDFSPGLFEDPSVGFATPDPK
KTTGPLSFGTKPTLGAAASDPTTAAFDCFPDTTTASSADSANPFAWPEENLGDACPRWGL
QPGELAKGLEQGGKAADSVGQESAHEAPACLGFQEEEPPGEKAVVPRDSKQEEVGGVKEE
AGGLLQCPEVGKADRWLEDSRHCCSTADFGDLPLLPPAGRKEDLEAEEEYSSLCELLGSP
ERRPGLQDPLSPKAPLMCGKEEVEEVLDPKAGWGSPCPLSGDSVILLGPTVGAESKVQSW
FESSLSHMKPGEEGPDGALAPGASAALAPDTSLAQKPNKPAVPEAPIAKKEPVPRGKSLR
SRRVQRGLPEAEDSPCRAPALPKDLLLPESCTGPPQGQMEGAGAPGRGASDGLPRMCTRS
FTALSEPRTPGPPGLPTXPAPPDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAALPVAS
DSSPMGSKTKETDSPDTPGKDQRPMILRSRTRTQEAFHSKRRRPSESRLPACRAAKKLLA
NNHLPATFKAAGSPQKEGRVGQRARVPKPGACGKLSDRPLHTLKRKSAFMAPVPTKKRNL
VLRSGAGGDGKEAGAEGSPTLFKRMTSPKKAKPTKGNGEPAVKPLPPETPDTCLKLASRA
SFQGAMKTKVLPPRKGRGLKLEAIVQKITSPSLKKFVCKAPGAPPGNPLSPSLPEKGLKS
AGGSPLGAEEGLLNVSTGQKFPATLGGDLLCRNPTNRPLKGKLVNSKKLSSTDCFKTEAF
MSPEALLPGGTALAPKKRSRKGRAGALGPPKGSLEKRPHLGPALLLTPRDRANGTPGNSE
DSSGGGGKKPKTEELGLASQAPEGRLCQPQTRAQKQLGLAGHSSYSKRKRLTRGRAKNAS
SSPCKGRAKRRRQQQVLPLDPAEPEIRLKYISSCKRLRADSRTPAFSPFVRVEKRDAFTT
VCTVVNSPGEEPKPHRKPSSSTSSSSSSCSYSLDAAGASLAMLPGGSVLQPRPSLPLSST
MHLGPVVSKALSTSCLVCCLCQNPANFKDLGDLCGPYYPEHCLPKKKPKLKEKVRPEGTC
EEASLPLERTLKGLECPAATAAAATTGKPPRPDGPADPAKQGSLRTSARGLSRRLQSCYC
CDGRGDGGEEAALADKSRKHECTKEPPAEPGGDTQEHWVHEACAVWTGGVYLVAGKLFGL
QEAMKVAVDMTCSSCQEAGATIGCCHKGCTHTYHYPCASDAGCIFIEENFSLKCPKHKRL
PL
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcttttcgagaaaggtgtggtttccatggcaaacaacagaactaccagcagacc
tcgcaggagccgtctcgcctggagaactgcaggcagccgggccaggccgggctgagctgt
gaccggcagcggctgctggccaaggactattacaacccgcagccctacccgggctacgag
ggcagcgcgggcacgcccgccagcgcagcccgcggcaccaagggcctgccggcgcagcag
gccctgcccgggcggccggccttcccaggctacaacgtgcaggacggcggcccctacccc
ggccgctactcaggcgaggagagcttgcaggcctggggggccccccagccgccacccccc
cagccgcagcccctgccaggaggggtgggcaagtatgacgagaacctgctgaaaaagacg
gcggtgccgcctggcaggcagtaccccgagcagggcgcccagctgcccttccggactcac
tccctgcacgtccagccgcagctgccacagcccctggcctatcccaagctccagaggcag
aaactgcagaacgatctcgcctcacctctgcccttcccccagggcggccactttccccag
cactcccagtcctttcccacgtcctccacctactcctcccccggccaggccggggggcag
ggggcccattcctataagagttgcacagcaccgtccgcccagccccatgacaggccactg
accgccagctccagcctggccccagggccgcgggtccagaaccttcatgcctatcagtcc
ggccgcctcagctacgaccagcagaagcagcagcagcaagccctgcagagccgccaccat
gcccaggagagcctgcactaccagaccctcgccaagtaccaacactatggccagcaaggc
cccggcttctgccagccggacgcagcggtcaggcccccggagcagtactaccagaccttc
agccccagctccggccactcacccgcgcgctccgtgggccgctccccctcctacagctcc
accccgtcgccgctcatgcccaacctggagaacttcccctacaaccagcagccgctcagc
accggggccttccctgccggcctcaccgaccacagccacttcatgcccctgctcaacccc
tccccgacggacgccgccagctccgtggacgcccaggccggcaactgcaaggccttgcag
aaaaacaagctccctgagacgcttctgtcagatctgagcctgcagagcctcacagcgctg
acctcgcaggtggagagcatgtccaccacggtccagcagctgctgctctctcaggccgcc
gcgccgcagaagaagggcgtcaagcacctggcgtcccggaccccggagcagcacaagagc
cagcactgcagccccgagggcagcggctactcagccgagccggtgggcacgccgctgtcg
gagccgctgagcagcacgccgcagtccagccatgccgagccgcctgagacagactacctg
agcggctctgaggacccgctggagcgtggcttcctctactgcggccaggctcgcggcagc
cccgccagggtcaacagcagctgcaaggccaagcccgagtcggtgtccacctgctccgtg
acctcgcccgacgacgtgtccaccaagtccgacgactccctnnnnnnnnnnnnnnnnnnn
nccctggcgcaggaggacctggcctccgagatcctagggctgcaggaggccgtcggcgag
aaggccgacaaggcctgggccgaggcgcccagcctggccaaggatgcctgcaagccaccc
ttctcgctggagaaccacagcgcctgcctggactctgtggccaaggctgcatggccgagg
ccgggggagccagaggcccttcctgggtccctgcagctggataagggtggtggcgccaag
gacttcagcccggggctgtttgaagacccgtctgtgggcttcgccacccccgaccccaag
aagaccaccggtcccctctcctttggcaccaaacccacccttggggctgccgcctctgac
cccaccacggcggcgtttgactgctttccagacacgaccaccgccagctcggcggacagc
gccaacccctttgcctggcccgaggagaacctgggggatgcttgtccccggtgggggctg
cagcccggtgagctcgccaagggtctggagcagggcgggaaggccgcggacagcgttggc
caggagtccgcccatgaggctccggcctgcctgggcttccaggaggaggagcccccgggg
gagaaggccgtggtgcctcgggactccaagcaggaggaggtgggtggggtgaaggaggag
gcgggcgggctgctgcagtgccccgaggtgggcaaggctgaccggtggctggaggacagc
cggcactgctgctccactgcggacttcggggacctcccgctgttgccgcccgccggcagg
aaggaggacctggaggcggaggaggagtactcctccctgtgcgagctcctgggcagcccc
gagcggaggccgggcctgcaggacccgctgtcgcccaaggccccactaatgtgcggcaag
gaggaggtggaggaggtgctggacccgaaggctggctggggctccccgtgccctctctct
ggggactccgtcatcctgctgggccccactgtgggcgccgagtccaaggtccagagctgg
tttgagtcctccctgtcccacatgaagcctggggaagaagggcctgatggggcgctggct
ccgggggcttccgccgccctggcccccgacacctccctggcccagaagccaaacaaaccc
gctgtacccgaggctcccatcgctaagaaagagcccgtgcctcgtggcaaaagcttgcgg
agccggcgggtgcagcgggggctgcctgaggctgaggactccccgtgcagggcgccggcg
ctgcccaaagacctgctgctccccgagtcctgcacggggcccccacagggacagatggaa
ggggcgggagccccaggccgtggggcctcagatggacttcccaggatgtgcacccgctcc
ttcacggccctgagcgagccccgcacacccggccccccaggcctgcccaccnacccggcc
cccccagacaaactggggggcaagcagcgagccgccttcaagtcgggcaagcgggtgggg
aagccttctcccaaggccgcgtccagccccagcaacccagccgccctgcctgtggcctcc
gacagcagccccatgggctctaagacgaaggagacagactcgccggacacaccaggcaaa
gaccagcgccccatgatcctgcggtcccgcacgcggacccaggaggccttccactccaag
cggcggcggccctcggagagccggctccctgcctgccgcgctgccaagaagctcctggct
aacaaccacctgcctgccacgttcaaggccgccggcagcccccagaaggagggcagggtg
ggccaacgggccagggtccccaagcctggagcttgcggcaagctctccgatcggcccctg
cacaccctcaaaaggaagtcggccttcatggcgcccgttcccaccaagaagcggaacctg
gtcctacgcagcggcgctggcggtgacgggaaggaggcgggggctgagggctcccccacc
ctcttcaagaggatgacctctcccaagaaggccaagcccaccaagggcaacggtgagccc
gcggtgaagccactgcccccagagacccctgacacctgcctgaagctggcctcgcgggcg
tccttccagggggccatgaagaccaaggtgctgccgccccggaaaggccggggcctgaag
ctggaggccatcgtgcagaagatcacctcgcccagcctgaagaagttcgtgtgcaaagca
ccaggggccccacccgggaatcctctgagtccatccctccctgagaaggggctcaagagc
gccgggggcagccctctgggggcagaagaaggtctcttaaatgtgagcaccgggcagaag
ttcccagcaactttggggggtgacctgttatgcagaaatccgaccaacagacccttaaaa
ggcaaacttgtgaacagtaagaaactgtcctcaaccgactgtttcaaaactgaggccttc
atgtccccagaggccctgctgcctgggggcactgccctggcgcctaagaagagaagccgg
aaaggccgggccggagccctcggaccccccaaaggctccctggagaagcggccccatcta
ggcccagctctgctcctgactccccgagacagggccaatggcacaccgggtaatagtgag
gacagctctggtggaggaggcaagaagccaaagacggaggagctgggcctggcctcccag
gcccccgagggccggctctgccagccccagacgagggcgcagaagcagctgggcctcgcc
ggccacagcagctattccaagcggaagcgcctgacgcggggccgggccaagaacgccagc
tcctccccctgtaaggggcgtgccaagcggcggcggcagcagcaggtgctgcccctggat
cccgcagagcctgaaatccgcctcaagtacatttcttcctgcaagcgtctgcgggcagac
agccgcacccctgccttctcgccctttgtgcgggtggagaagcgggatgcattcaccacc
gtgtgcactgttgtcaactcccccggagaggagcccaaaccccacaggaagccttcctcc
tccacttcctcttcctcatcctcttgctcctactccttggacgcggccggggcctccctg
gccatgctccctgggggctccgtcctgcagcctcggccctccctgcccctctcctccacc
atgcatctggggcccgtggtttccaaggccctgagtacctcttgccttgtttgctgcctc
tgccaaaacccggccaacttcaaggaccttggggatctctgtgggccctactaccccgaa
cactgcctccccaaaaagaagccaaaactcaaggagaaggtgcggccggagggcacctgc
gaggaggcctcgctgcctctcgagaggacactcaaaggcctcgagtgcccagctgccacc
gctgctgccgccaccactgggaagccccccaggcctgacggcccggccgacccagccaag
cagggctccctgcgcaccagcgcccggggcctgtcccggcggctgcagagttgctactgc
tgtgacggtaggggggatggcggcgaggaggcagccctagccgacaagagccgcaagcat
gagtgcaccaaggagccgccggcagagcctggcggggacacccaggagcactgggtgcac
gaggcctgcgccgtgtggacgggcggggtctacctggtggccgggaagctctttgggctg
caggaggccatgaaggtggccgtggacatgacttgttccagctgccaagaagccggggcc
accatcgggtgctgccacaaaggatgcacccacacataccattacccgtgtgccagcgat
gcaggttgcatcttcatcgaagagaacttttctttgaaatgccccaaacataagaggctg
cctttgtaa
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