Vicugna pacos (alpaca): 102538556
Help
Entry
102538556 CDS
T08098
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X3
KO
K12828
splicing factor 3B subunit 1
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102538556 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102538556 (SF3B1)
03036 Chromosome and associated proteins [BR:
vpc03036
]
102538556 (SF3B1)
Spliceosome [BR:
vpc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102538556 (SF3B1)
Complex B
102538556 (SF3B1)
Complex C
U2 SnRNP specific factors
102538556 (SF3B1)
Chromosome and associated proteins [BR:
vpc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102538556 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
102538556
NCBI-ProteinID:
XP_006216058
UniProt:
A0A6I9IQA3
LinkDB
All DBs
Position
5
AA seq
1373 aa
AA seq
DB search
MVLWWFWTQRSCGDSSNRGGCSVTCYPTVRALPLGACAENSPQLFFSVAAATSGSSWERQ
FRLCVRVDKMAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRF
AGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPK
IADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQ
LAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLR
WDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKN
RWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTP
VLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEG
YKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDD
IQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPL
FNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARV
EGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAV
CKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAA
LAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVML
ILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYR
QLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQ
LIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQA
ADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTP
PIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKK
AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPA
LMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAV
VQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCL
QGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggtcctttggtggttctggactcaacgtagctgtggggactcaagcaataggggtggc
tgctctgtcacgtgttacccgacggtgcgcgcgctcccgctcggtgcatgcgcagagaac
agcccgcagctatttttctccgtggccgcggcgacgagcggaagttcttgggagcgccag
ttccgtctgtgtgttcgggtggacaaaatggcgaagatcgccaagactcacgaagacatt
gaagcacagattcgagaaattcaaggcaagaaggcagctcttgatgaagctcaaggagtg
ggccttgattctacaggttattatgaccaggaaatttatggtggaagtgacagcagattt
gctggatacgtgacatcgattgctgcgactgaacttgaagatgatgacgacgactactca
tcatctacaagtctgctcgggcagaagaagccaggataccacgcgcctgtggcactgctt
aatgacataccacagtcaacagaacagtatgatccatttgctgagcaccgacctccgaag
attgcagaccgggaagatgagtacaaaaaacataggcggaccatgataatttccccggag
cgtcttgatccttttgcagatggagggaagacccctgatcctaaaatgaatgctaggact
tacatggatgtaatgcgagaacagcatttaactaaagaagagagagaaattaggcaacag
ctagcagaaaaagctaaagctggagaactaaaagtcgtcaatggagcagcagcatcccag
cctccttcaaaacgaaaacggcgttgggatcaaacagctgatcagactcctggtgccact
ccaaaaaagctatcaagttgggatcaagcagagacccctggacataccccttccttaaga
tgggatgagacaccaggtcgtgcaaagggaagtgagactcctggagcaaccccaggctca
aaaatatgggatcctacacctagtcacacacctgcgggggctgctactcctgggcgaggt
gatacaccaggccacgcaacaccaggccacggaggtgcaacttccagtgctcgtaaaaac
agatgggatgagacccccaaaacagaaagagatacccctgggcatggaagtggatgggct
gagactcctcgaacagatcgaggtggagattccattggtgaaacaccaactcctggcgcc
agtaaaagaaagtcacgttgggatgaaacaccagctagtcagatgggtggaagcactcct
gttctgacccccggaaaaacaccaattggcacaccagccatgaacatggctacccctact
ccaggtcacataatgagtatgactcctgaacaacttcaggcttggcggtgggagagagaa
attgatgagagaaatcgcccactgtctgacgaagaattagatgctatgttcccagaagga
tataaggtacttcctcctccagctggttatgttcctattcgaactccagctcgaaaactg
acagcaactccaacacctttgggtggtatgaccggtttccacatgcaaactgaagataga
actatgaaaagtgttaatgaccagccatctggaaatcttccatttttaaaacctgatgat
attcagtactttgataaacttttggttgatgttgatgaatcaacacttagtccagaagag
caaaaagagagaaaaataatgaagttgcttttaaagattaagaatggaacacctccaatg
agaaaggctgcgttgcgtcagattactgataaagctcgtgaatttggagctggtcctttg
tttaatcagattcttcctctactgatgtctcctacacttgaggatcaagaacgtcattta
cttgtgaaagttattgatagaatattatacaaacttgatgacttagttcgaccatatgtg
cacaagatcttagtggtcattgaaccattgttgattgacgaagattactatgccagggtg
gaaggtcgagagattatttctaatttggcaaaggctgctggtctggctactatgatctct
accatgagacctgatatagataacatggatgagtatgtccgtaacacaacagctagagct
tttgctgttgtcgcctctgccctggggattccttcattattgcccttcttaaaagctgtg
tgcaaaagcaagaagtcctggcaagcgagacacactggtattaagattgtacaacaaata
gctattcttatgggctgtgccatcttgccacatctcagaagtttagttgaaatcattgag
catggtctcgtggatgagcagcagaaagttcggaccattagtgctttggccattgctgcc
ttggctgaagcagcaactccctatggtattgaatcttttgattctgtgttaaagcctcta
tggaagggtatccgccaacacagaggaaagggtctggctgctttcttaaaagctattgga
tatcttattcctctcatggatgcagaatatgccaactactatactagagaagtgatgtta
attcttattcgagaattccagtctcctgatgaagaaatgaagaaaattgtgctgaaggtt
gtaaagcagtgttgtggaacagatggtgtagaagcgaactacattaaaacagagatcctt
cctccttttttcaaacacttctggcaacatagaatggctttggatagaagaaattaccga
cagttagttgatactactgtggagttggcaaacaaagtaggtgcagcagaaattatctcc
aggattgtggatgatctgaaagatgaagctgagcagtacagaaaaatggtgatggaaaca
attgagaaaattatgggcaatttgggagcagcagatattgatcataaacttgaagaacaa
ctgattgatggtattctttatgctttccaagaacagactacagaggactcagtaatgttg
aacggctttggcacagtggtcaatgctcttggcaaacgagtcaaaccttatttgcctcag
atctgtggtacagttttgtggcgtttaaataataagtcagcaaaagttcggcaacaggca
gctgacttgatctctcgaactgctgttgttatgaagacttgtcaagaggaaaaactgatg
gggcacttgggtgttgttttgtatgagtatttgggtgaagagtaccctgaagtcttgggc
agcattcttggagcactgaaggccattgtaaatgtaataggtatgcataagatgacccca
ccaattaaagatctgctgcctagactcacccccatcttaaagaataggcatgagaaagta
caagagaattgtattgatcttgttggacgtattgctgataggggagctgaatatgtatct
gcaagagaatggatgaggatttgttttgagcttttagagctcttgaaagctcacaagaaa
gctattcgcagagccacagtcaacacgtttggttatattgcaaaggccatcggccctcat
gatgtattggctacacttttaaacaacctcaaagttcaggaaaggcagaacagagtttgt
accactgtagcaatagctattgtcgctgaaacgtgttcacccttcacagtactgcctgcc
ttaatgaatgaatacagagttcctgaactgaatgttcaaaatggagtgttaaagtcactt
tccttcttgtttgaatatattggcgaaatgggaaaggactacatttatgctgtaacacca
ctacttgaagatgctttaatggatagggaccttgtacacagacagacggctagtgcggtg
gtgcagcacatgtcacttggggtttatggattcggttgtgaagattcgctgaatcacttg
ttgaactacgtatggcccaatgtgtttgagacatctccccatgtaattcaggcagttatg
ggggccctggagggtctgagagttgctattggaccatgcagaatgcttcagtattgttta
cagggtttgtttcatccagcccggaaagtcagagatgtatattggaaaatttacaattcc
atctacattggttcacaggatgctctcatagcacattacccaagaatctacaatgatgat
aagaacacctatattcgttatgaacttgattatatcttataa
DBGET
integrated database retrieval system
