Vicugna pacos (alpaca): 102538753
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Entry
102538753 CDS
T08098
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpc03009
]
102538753
Enzymes [BR:
vpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102538753
Ribosome biogenesis [BR:
vpc03009
]
Eukaryotic type
Pre-60S particles
Helicases
102538753
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
IQ
Motif
Other DBs
NCBI-GeneID:
102538753
NCBI-ProteinID:
XP_006220449
UniProt:
A0A6I9IVH3
LinkDB
All DBs
Position
32
AA seq
1282 aa
AA seq
DB search
MALDMLAVAPLYPGPDVNKIRLIAETTKKSTTPPKLLVPTEPKLTTIETKRIMSVLDDTI
HKVELVTLLSYVASNPEDLEGMLGEDIMKAVREHGHLCQILLDHVGYLQEEERQLQGEDV
FEDEPWFRDRLLSIELQRSHLPPLVQQVKESTKDIVRLLLNNPQAAASLLQVQPLGRSAE
AQSFIDSLIELRGFLFEKLLTSPMEAREKAHFVQDISRRNRRNQEIIDTLENELAACVKN
RDAEVEKENFVIQELKNQLHQVCKFSENSLLRTKLEAEKQQKVDFRASQARVAKIQQDIL
MLRSQFHNLVSENWEAEQMLRKKKYKVETEIENWIQKYDTEMSEKQDEYQELDIIHKEEK
LQLEELKQRYEVLMEEFSQIQAEQEINTKKRLEAEQEMVRMVRAATLIQALWRGYLVRSM
LKSKKKKGLRKRRGTASQSRSSDSEDGEFEIQAEDDARAQKLGPSRPLPTFPTSECTSDV
EPDTRELVRAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVV
AMARTGSGKTACFLIPMFERLKTHSAQTGARALVLSPTRELALQTMKFTKELGKFTGLKT
ALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEMNLKLQGVEYVVFDEADRLFEMGF
AEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFL
VREDAKAAVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQRVSCAHIYSALDQTAR
KINLAKFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGT
AYSLVAPDEIPYLLDLHLFLGRALTLARPHEEPSGAGALDGVLGRVPQSVVDDEDSGLRS
TLEASLELRGLCRVADNAQQQYVRSRPSAPPESIKRAKELDLAALGLHPLFSSRFEEKEL
QRLTLVDRIKHYRSRATIFEINASSRDLSSQVMRAKRQKDRKAIASFQQGRQERQEHLAG
PAPSLPAPAPQEEQLEKEEETVGESIEDVFTEVVGRKRQQPGPVRGAKRRREEARQRDQA
FYVPYRPKDFDSERGLSVSGDGGAFEQQVAGAVLDLMGDEAQNLTRGRQQLKWDRKKKRF
VGQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQKQKIDDRDSEEEGASGRRGPERRGGK
RGRGQGVSQPRATSATGGRVRSELKTKQQILKQRRRAQKLRFLQRGGLKQLSARNRRRAQ
ELQQGAFGRGAHSKKGKMRKRM
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggctttggacatgctcgccgtggcccctctctacccgggccctgacgtcaacaaaata
aggctgatagcagagacaaccaaaaagtcaaccaccccgccgaaactcttggtccccact
gagcccaaactcaccaccattgagaccaagaggatcatgtccgtcctagacgacaccatc
cacaaggtggagttggtgaccctgctgtcatacgtggcgtccaatcccgaggatctggag
gggatgctgggggaggacatcatgaaggcagtgagagagcacgggcacctttgccagatc
ctcctggatcacgtcggttacctgcaggaggaagaacggcagttgcagggggaagatgtg
ttcgaggatgaaccatggttccgagaccgcctcctctccatagagctgcagagatcccac
ctcccaccacttgtgcagcaggtcaaagaatccaccaaggacatcgtgagactcctgctc
aataacccccaggcggcagccagtctcctgcaggtgcagccactgggcagaagtgcggaa
gcccagagttttattgatagcctgatagagctccgaggtttcctgtttgagaagcttctc
actagccccatggaagccagagagaaggctcattttgtacaggacatcagcagacggaat
cggaggaaccaggaaatcatcgacacgctggaaaatgaattggcagcatgcgtgaagaac
agggatgcagaggtggagaaggagaactttgtgatccaagaactgaaaaaccaactgcac
caggtgtgcaagttctcagaaaacagcctccttcgcaccaagctggaggctgagaagcag
cagaaggtagacttccgggcctcgcaggccagggtggccaagatccaacaggacatcctg
atgctgcggtcacagttccacaacctggtctcagagaactgggaggcggagcagatgctg
aggaagaaaaaatataaagtggagacggaaattgagaactggatccagaaatatgatacg
gagatgagtgaaaagcaggacgagtaccaggagctggacatcatccacaaggaggagaaa
ctccagctggaggagctgaagcaacggtacgaggtgctgatggaagagttttcccagatc
caggccgaacaggagattaacaccaagaagaggctggaggccgagcaggagatggtgcgc
atggtgcgggccgccactctcatccaggccctgtggaggggctacctggtccgttccatg
ctcaagtccaagaagaagaaggggctccggaagcgccggggcacggcctcccagtcccgc
agcagcgactcggaggacggcgagtttgagatccaggcggaagatgacgcccgggcccag
aagctgggacccagcagacccctccccacattccccacctcggaatgcacctcggacgtg
gagccggacacacgggagctggtgcgagcccagaacaagaagaagaagaagtcgggaggc
ttccagtccatgggcttgagctacccggtgttcaaaggcatcatgaagaaaggctacaag
gtgccgacgcccatccagaggaagaccatcccggtgatcctggatggcaaggacgtggtg
gcgatggcccggacgggcagcggcaagacggcctgtttcctcatccccatgttcgagcgg
ctcaagacccacagcgcccagaccggggcccgcgccctcgtcctctcccccacccgagag
ctggccctgcagaccatgaagttcaccaaggagcttggcaagttcactggcctcaagact
gccctgatcctcggcggggacaaaatggaagaccagtttgcagccctgcatgagaatccc
gacataatcattgctacccctgggcgcttggtgcacgtggccgtggagatgaacctgaag
ctccagggtgtggagtacgtggtatttgatgaggccgacaggctctttgaaatggggttc
gcagagcagctgcaggagatcatcggccgcctccccgggggccaccagaccgtcctgttc
tccgccacgctgcccaagttgttggtggagttcgcccgggccggcctcacggagcccgtg
ctcatccggttagacgtggacgccaaactcaacgagcagctcaagacgtccttcttcctc
gtgcgcgaggacgccaaggccgctgtcctgctccaccttctgcgcaccgtggtgcggccc
caggaccagaccgtggtgtttgtggccaccaagcaccacgcggagtatctcagtgagctg
ctgacgacccagcgagtgagctgcgcccacatctacagcgccctggaccagacagcccgc
aagatcaacctggccaagttcactcacggcaagtgctccgccctcatcgtgacggacctg
gcagctcggggcttggacatcccgctgctggacaacgtcatcaactacagcttccctgcc
aagggcaagctcttcctgcaccgtgtgggccgcgtggcccgggccggccgaagtggcacg
gcctattccttggtggccccagacgagatcccctacctgctggacctgcacctcttcctg
ggccgtgccctcaccctcgcccgtccccatgaagagccctcaggcgcgggcgccctggat
ggggtgctgggccgggtgccgcagagcgtggtggacgacgaggacagcggcctgcggagc
accctggaggcgtcgctggagctgcggggcctgtgccgcgtggccgacaacgcccagcag
cagtacgtgcgctcacggccaagcgccccccccgagtccatcaagagggccaaggagctg
gacctcgcggcgctggggctgcaccccctcttcagctcccgcttcgaggagaaggagctg
cagcggctgacactggtggaccgcatcaagcactaccgctcccgggcgaccatctttgag
atcaatgcctctagccgggacctcagcagccaggtgatgcgcgccaagcggcagaaggac
cgcaaggccatcgccagcttccagcaggggcggcaggagcggcaggagcacctggccggc
ccagccccgagcctcccggcaccagcaccgcaggaggagcagcttgagaaggaggaggag
acggtgggagagagcatagaggacgtcttcacagaggttgtgggccggaagcgccagcaa
ccaggacctgtccggggagccaagaggcggagggaggaggcccggcagcgggaccaggcg
ttctacgtcccctaccggcccaaggacttcgacagcgaacggggcctgagcgtcagtggg
gatgggggcgccttcgaacagcaggtggctggtgctgtcctggacctgatgggggacgaa
gcccagaacctgaccaggggccggcagcagctcaagtgggaccggaagaagaagcggttt
gtgggacagtcgggacaggaggacaagaagaagatcaagacggagagtggccgctatatc
agcagctcctacaagcgggacctctaccaaaagtggaaacagaaacagaaaattgatgat
cgtgactcagaagaggaaggggcatcgggccggcgcggcccagagcgaagaggtgggaag
cgcggccgagggcaaggtgtgtcccagccccgcgccaccagcgccaccggaggccgcgtg
cgctcagagctcaagaccaagcagcagatcctgaagcagcggcgccgagcccagaagctg
cgcttcctgcagcgcgggggcctcaagcagctctctgcccgcaaccggcgccgcgcccag
gagctgcagcagggcgccttcggccggggcgcccactccaagaagggcaagatgcggaag
aggatgtaa
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integrated database retrieval system
