Vicugna pacos (alpaca): 102539387
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Entry
102539387 CDS
T08098
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102539387 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpc03021
]
102539387 (SF3B3)
03041 Spliceosome [BR:
vpc03041
]
102539387 (SF3B3)
03036 Chromosome and associated proteins [BR:
vpc03036
]
102539387 (SF3B3)
Transcription machinery [BR:
vpc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
102539387 (SF3B3)
Spliceosome [BR:
vpc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102539387 (SF3B3)
Complex B
102539387 (SF3B3)
Complex C
U2 SnRNP specific factors
102539387 (SF3B3)
Chromosome and associated proteins [BR:
vpc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
102539387 (SF3B3)
TFTC complex
102539387 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
102539387
NCBI-ProteinID:
XP_006199757
UniProt:
A0A6I9HZN8
LinkDB
All DBs
Position
9
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaatttgaccttgcagcgagccactggcatcagctttgccattcatggc
aacttctctggaaccaaacaacaagaaattgttgtttcccggggaaagatcttggagttg
cttcgccctgaccccaacactggcaaagtacacactctactaactgtggaagtatttggt
gttattcgttcactcatggcttttaggctgacgggtggcacgaaagactacattgtggtt
ggcagtgactcaggtcggattgttatcctagaataccagccatctaagaacatgtttgaa
aaaattcaccaagaaacctttggcaagagtggatgccgtcgcattgttcctggccagttc
ttagctgtggatcccaaagggcgagcagttatgattagtgctattgagaaacagaagttg
gtgtatatcttgaacagagatgctgcagcccggcttaccatttcttctcccctggaggct
cacaaagcaaacactttagtgtatcatgttgttggagtagatgtgggattcgaaaatcca
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaactggggaagca
gcagctaatacccagcagacacttactttctatgagttagaccttggtttaaatcacgtg
gtccgaaaatacagtgaacctttagaagaacatggcaacttccttattacagttcccgga
gggtcagatggtccaagtggtgtgctgatctgctctgaaaactatatcacctacaagaac
tttggtgaccaaccagatatccgctgtccaattcccaggagacggaatgacctggatgac
cctgaaagaggaatgatttttgtctgctctgccacccataagaccaaatcgatgttcttc
tttttggcccaaacagagcagggagatatctttaagattactttggagacagatgaagat
atggttactgagatccggctcaagtattttgatactgtgcctgttgctgctgccatgtgt
gtgcttaaaacaggcttcctttttgtagcatcagaatttggaaatcattacttatatcaa
attgcacatcttggagatgatgatgaagaacctgagttttcatctgccatgcctctggaa
gaaggagacacattcttctttcagccaagaccactcaaaaaccttgtgctggttgatgag
ttggacagcctctctcccattttgttttgccagatagctgatctggccaatgaagacact
ccacagctgtatgtggcctgtggtaggggaccccggtcatctctgagagtcttaaggcat
ggacttgaggtatcagaaatggctgtctcagagctacctggtaaccccaatgctgtctgg
acagtgcgtcggcacattgaagatgagtttgatgcctacattattgtgtctttcgtgaat
gccacactggtgttgtccatcggagagactgtggaggaagtgactgactctgggtttctg
ggcactaccccaaccttatcctgctccttgttaggagatgatgccttggtgcaggtgtat
cctgatggcattcggcacatacgagcagacaagagagtcaatgagtggaagactcctgga
aagaaaacaattgtgaaatgtgcagtgaaccagcgacaagtggtgatcgccctaacagga
ggagagctggtctattttgagatggatccctcaggacagctgaacgagtacacagagcgg
aaggaaatgtcagcagatgtggtgtgcatgagtctggccaacgtgccccctggagagcag
cggtctcgtttcctggctgtggggctggtggacaacactgtcagaatcatctccctggat
ccctcggactgtttgcaacctctaagcatgcaggctcttccagcccagcctgagtccttg
tgtattgtggaaatgggtgggactgagaagcaggatgaactgggtgagaggggctctatt
ggcttcttatacctgaatattgggctacagaatggtgtgctgctgagaactgtcctggac
cctgtcactggggatctatctgacacccgtactaggtatctgggatctcgtcctgtgaaa
ctctttcgtgtccggatgcaaggccaggaggccgtgttggccatgtcaagccgctcgtgg
ttgagctattcttaccaatctcgtttccatctcacccccctgtcttatgagaccctggaa
tttgcatctggcttcgcctctgaacagtgccctgagggcattgtggccatctccaccaat
accctgaggattttggcgttggagaagctcggtgctgtcttcaatcaagtagcctttcca
ctgcagtacacacccaggaaatttgtcatacaccctgaaagtaacaaccttatcatcatt
gagactgaccacaatgcctacactgaggccacaaaagcgcagaggaagcagcagatggca
gaggaaatggtggaagcagcaggggaggatgaacgggagttagctgcagagatggcagca
gcattcctcaatgaaaacctccctgagtccatttttggagctcctaaggctggcaatggg
cagtgggcctctgtgatccgagtgatgaatcctattcaggggaacacactggaccttgtc
cagctggaacagaatgaagctgcttttagtgtggctgtgtgcagattctccaacactggt
gatgattggtatgtgctggtgggtgtggccaaagacctgatactgaacccccgatctgta
gcaggaggctttgtctatacctacaagcttgtgaacaatggggaaaaactggagtttttg
cataagactccagtggaagaggtccctgctgccattgccccattccaggggagggtgttg
attggtgtggggaagcttctgagagtctatgacctgggaaagaagaagttactccgaaag
tgtgagaacaagcatatcgccaattacatctctgggattcagactattggacatagggta
attgtatctgacgtccaagaaagtttcatctgggttcgctacaagcgtaacgaaaaccag
ctcatcatctttgctgatgacacctaccctcgatgggtcacaacagctagcctcctcgac
tatgatactgtggctggagcagacaagtttggcaacatttgtgtggtgaggctcccacct
aataccaatgacgaagtggatgaggatcccaccggaaacaaagccctgtgggaccggggc
ttgctcaatggggcctctcagaaggcagaagtgatcatgaactatcatgtgggcgagaca
gtactttcattacagaagaccacgctgatccctggaggctcagaatcacttgtctacacc
accttgtcaggaggaattggcatccttgtcccattcacatctcatgaggaccatgacttc
ttccagcatgtggaaatgcacctacgatctgaacatccccctctctgtggacgagaccac
ctcagttttcgttcctattacttccctgttaagaatgtgattgatggagacctgtgtgag
cagttcaactccatggagcccaacaaacaaaagaatgtctctgaagaactggaccgaacc
ccacctgaggtgtccaagaagcttgaggacatccggactcgctatgccttttga
DBGET
integrated database retrieval system
