Vicugna pacos (alpaca): 102539606
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Entry
102539606 CDS
T08098
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1 isoform X2
KO
K13126
polyadenylate-binding protein
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03015
mRNA surveillance pathway
vpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102539606 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
102539606 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102539606 (PABPC1)
03041 Spliceosome [BR:
vpc03041
]
102539606 (PABPC1)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102539606 (PABPC1)
mRNA cycle factors
Stress granule specific factors
102539606 (PABPC1)
Spliceosome [BR:
vpc03041
]
Complex C
Other components
Complex C specific factors
102539606 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_RDR6
RRM_7
YflT
POP1_C
Motif
Other DBs
NCBI-GeneID:
102539606
NCBI-ProteinID:
XP_015101507
LinkDB
All DBs
Position
25
AA seq
562 aa
AA seq
DB search
MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV
CDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT
NVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK
ELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF
SPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER
QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPS
PRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRP
AAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAP
PQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL
QAHQAKEAAQKAVNSATGVPTV
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgatgttataaagggcaagccagtacgcatcatgtggtctcagcgtgatcca
tcacttcgcaaaagtggagtgggcaacatattcattaaaaatttggacaaatctattgat
aacaaagcactgtatgatacattttctgcttttggtaacatcctttcatgtaaggtggtt
tgtgatgaaaatggttccaagggttatggatttgtgcattttgagacacaagaagcagct
gaaagagctattgaaaaaatgaatgggatgcttctaaatgatcgcaaagtatttgttgga
cgatttaagtctcgtaaagaacgagaagcagaacttggagctagggcaaaagagttcacc
aatgtttacatcaagaattttggagaagacatggatgatgagcgccttaaggatctcttt
ggacctgccttaagtgtgaaagtaatgactgatgagagtggaaaatccaaaggttttgga
tttgtaagctttgaaaggcatgaagatgcacagaaagctgtggatgagatgaatggaaag
gagctcaatggaaaacaaatttatgttggtcgagcccagaaaaaagtggaacggcagacg
gaacttaagcgcaaatttgaacagatgaagcaagataggatcaccagataccagggtgtt
aacctttatgtgaaaaatcttgatgatggtattgatgatgaacgtctccggaaagagttt
tctccgtttggtacaatcactagtgcaaaggttatgatggagggtggtcgcagcaaaggt
tttggttttgtatgtttctcctccccagaagaagccactaaagcagttacagaaatgaat
ggtagaattgtggccaccaagccattgtatgtagctttagctcagcgcaaagaagagcgc
caggctcacctcactaaccaatatatgcagagaatggcgagtgtaagagctgtgcccaac
cccgtaatcaacccctaccagccagcacctccttcaggttacttcatggcagctatccca
cagactcagaaccgtgctgcatactatcctcctagccaaattgctcaactaagaccaagt
cctcgctggactgctcagggtgccagacctcatccattccaaaatatgcccggtgctatc
cgcccagccgctcctagaccaccatttagtactatgagaccagcttcttcacaggttcca
cgagtcatgtcgacacagcgtgttgctaacacatcaacacagacgatgggtccacgtcct
gcagctgctgccgctgcagctactcctgctgttcgcacagttccgcagtataaatacgct
gcgggcgtccgcaatcctcagcagcatcttaatgcacagccacaggtcaccatgcagcag
cctgctgttcatgtacaaggtcaggagcctttgactgcttccatgttggcatctgcccct
ccgcaagagcagaagcaaatgttgggtgaacggctcttccctctaattcaagccatgcac
ccttctcttgctggtaaaatcactggcatgttgttggagattgataattcagaacttctt
catatgctcgagtctccagagtctctccgttctaaagttgatgaagctgtagctgtacta
caagcccaccaagctaaagaggctgcccagaaagcagttaacagtgccactggtgttcca
actgtttaa
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