Vicugna pacos (alpaca): 102540026
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Entry
102540026 CDS
T08098
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X3
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102540026 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpc03021
]
102540026 (PCF11)
03019 Messenger RNA biogenesis [BR:
vpc03019
]
102540026 (PCF11)
Transcription machinery [BR:
vpc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102540026 (PCF11)
Messenger RNA biogenesis [BR:
vpc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102540026 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
102540026
NCBI-ProteinID:
XP_006197537
UniProt:
A0A6I9HVX1
LinkDB
All DBs
Position
10
AA seq
1555 aa
AA seq
DB search
MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKEFLVNTLNQSDTKTSKTVPSEKLNSSKQEKNKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESTRVSDISKRDPRLKKHLQDKTDSKDDDI
KEKRKTTEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTITEDSEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPPSR
EERNTKRSTKQDVRDPRRIKKTEEDRPQETANQHSTKSGTEPKENVENWQSSKSTKRWKS
GWEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYED
SDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVARDGPAKMIFEGPNKLSPRI
DGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
AGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGMRFDGPHGQPVG
GLRFDSPRGQPVGGLRFEGGHGPSGAALRFDGPHGQPSGGIRFEGPLLQQGVGMRFEGPH
GQSVAGMRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFDGPSVPGGGLRI
EGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQ
QVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGN
AFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQNFSNPLNRASGHYFDEKNLQSSQFG
NFGNLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYP
DNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPAEEEEDQNEDQDVPDLTN
FTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVT
HRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAV
ESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVE
NPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKIENDTVESV
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccggtactgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcactcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagtcttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttccggatatacaaaagaatctaacccaa
gagcaactaataaggcagcagttactggcaaaacaaaagcagttgttagaacttcagcag
aagaagctggagcttgagctagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccgtccaaattacatgtttcacaa
attccccctatggcagttaaagctccccatcaggttcctgtgcaacccgagaaaagtcgt
ccaggtccatccttacaaattcaggatttgaagggaactaaccgggatccccgtcttaat
aggatgagtcagcattcttctcatggaaaagatcagagtcacaggaaagaattcctagtg
aacacactgaaccagtctgatactaagacaagtaaaactgtaccctctgaaaaattaaat
tcatccaaacaagaaaaaaataaatcaggtgaaaaaataaccaagaaagaactcgaccaa
ttagattctaagtccaaatctaaatctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttaaaaaatcaagaatctgaaagcacaagggtgtctgatataagcaag
agagatccaagattgaaaaaacatcttcaggataagactgatagcaaagatgatgatata
aaagagaagaggaaaactacagaaaaaaaggataaagatgagcacatgaaatcatctgaa
catagactggtaggaagtagaaataaaatcataaatggcattgtacagaaacaggataca
ataacggaagattcggaaaaacaggggacaaaaccaggaagatcaagtactagaaagcga
tcaagatcacgatcacccaagtcccgctcgccgattatacattctcccaagagaagagat
aggcggtcacccaaacgaaggcaaaggagtatgtctccaacctcaacacccaaagctggg
aagattcgccagtcgggagttaagcagtcacatatggaagagtttactccaccttccagg
gaagaaagaaatacgaagagaagtactaaacaggatgttcgagatccaaggcgaataaaa
aagactgaagaggaccgaccacaagaaactgcaaatcagcattctacaaaatcaggcact
gaaccaaaggagaatgtagaaaattggcaaagttctaagtctaccaaacgatggaagtct
ggttgggaagagaataaaagtttacaacagggtgatgaacatagtaaagctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtgtacga
gaagagcagagatcaccgttcaatgatcgttttccacttaagcgacctagatatgaagat
tcagataaaccatttgtagatagcccagcatcaagatttgccggccttgatacaaatcaa
cgacttacggctttagctgaagacagaccattatatgatggacctagtaggccatcagta
gcaagagatggcccagccaagatgatttttgaaggacctaataaattaagccctagaatt
gatggacctcctacaccaggttctcttcggtttgatgggtcaccaggacaaatgggggga
ggtggccctttgagattcgaaggaccacaaggccagctaggaggtgggtgtcctttgaga
tttgaaggtcctccaggaccagtagggacacctctgcggtttgaggggccaattggtcaa
gcaggaggaggtggttttcggtttgaaggttctcctggtctgaggtttgaggggtctgca
ggtggtttgcgatttgaaggaccagggggccagcctgtgggtggtctcaggtttgaggga
catcggggtcaacctgtgggtggtatgaggtttgacggacctcatggtcagcccgtgggt
ggacttagatttgatagtccccgaggtcagcctgtaggtgggcttagatttgagggaggt
catggtccatcgggggctgcacttaggtttgatggacctcatggtcagccatctggtggg
atcagatttgagggccctttgctacagcagggagttggaatgaggtttgaaggcccccat
ggtcagtcagtagctggtatgaggtttgaaggccaacataatcagcttggtggcaacctt
agatttgagggtccacatggtcaaccaggggttgggatcaggtttgaaggacctttagtc
caacaaggaggtggaatgaggtttgacggtccttctgtaccaggaggtggcctgagaatc
gaaggacctctgggtcaaggtggtccaagatttgaaggttgtcatgctttaaggtttgat
gggcagccaggtcagccatcgctgttgccaagatttgatggattacatggtcagccaggt
cctagatttgaaagaactggtcagccaggcccacagagatttgatggaccacctggacag
caggttcaaccaagatttgatggtgtacctcagagatttgatgggccacaacaccagcaa
gcatcaaggttcgatattcctcttggtcttcaaggcacacgatttgacaatcatccttca
caaaggcttgaatcagtatctttcaatcagactggtccatataatgatccacctggcaat
gcttttaatgccccatcccaaggactacagttccaaagacatgaacaaatatttgattca
cctcaaggaccaaattttaatggaccacatggccctggaaaccagaatttctcgaatccc
cttaacagagcttctggacactattttgatgagaagaatcttcagagttctcaatttgga
aactttggcaatttgcctgctccaataacagtaggaaatattcaggcatctcaacaggtt
ctgactggtgttgctcagccagtagcatttggccagggacaacaatttttaccagttcat
ccacaaaatcctggagcatttgttcagaatccttcaggagcccttcctaaggcatatcct
gataatcatctcagtcaggtggatgtaaatgaattattttcaaaactgctgaaaacagga
attctcaaattgtcccagcctgattcagctacaacacaagtaaatgaagttgctgctcag
ccccctgctgaggaggaggaagatcaaaatgaagatcaggatgttccagatcttaccaat
tttacaatcgaagaattgaaacaacgttatgatagtgttataaatcgactgtacactggt
attcagtgttactcttgtggaatgaggtttacaacatcacagacagatgtatatgcagat
cacttggactggcattatcggcaaaatagaactgaaaaagatgttagcagaaaagtcact
cacagacgttggtactacagtttaacagactggatagaatttgaggaaatagctgacttg
gaagaacgtgcaaagagccagttttttgaaaaggtgcatgaagaagttgtgctcaaaact
caggaggctgctaaagaaaaggagttccaaagtgtacctgctggaccagctggggcagtt
gagagttgtgaaatttgtcaagaacaatttgaacagtactgggatgaagaggaggaggaa
tggcatttaaaaaatgctattagagtagatggaaagatttatcatccatcatgctatgaa
gattatcaaaatacatcttcatttgattgtacaccgtctcccagcaagacaccagttgaa
aatcccttgaacattatgttgaacattgtcaaaaacgaattgcaggaaccttgtgaaagt
cccaaagttaaggaagaacgaattgatactccaccagcttgtacagaggaaagcatagca
acacccactgaaattaaaatagaaaatgatacagttgagtcagtttaa
DBGET
integrated database retrieval system
