Vicugna pacos (alpaca): 102540542
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Entry
102540542 CDS
T08098
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha isoform X1
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
vpc
Vicugna pacos (alpaca)
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
vpc04040
]
102540542 (SCN11A)
Ion channels [BR:
vpc04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102540542 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
GPHH
Motif
Other DBs
NCBI-GeneID:
102540542
NCBI-ProteinID:
XP_031542663
UniProt:
A0A6J3BA88
LinkDB
All DBs
Position
17
AA seq
1895 aa
AA seq
DB search
MLKYMFSGSVINPFSGGSDGDLILWVGNSGRATMRMACLLHDVWGLSWKDMYSLLDRVHS
TAGGWNLLVFAFLSFGAAPPRRASTARSRSSDSVRDLLCGEFHEVHTGLLPGAILPEGRE
KMDERCYPVIFPDARNFRPFTPDSLAAIEKQMAIQKEEKKSKDQKSAEPQLRPQLDLKVS
RNLPKLYGDIPPELIAKPLEDLDPFYRNHKTFMVLNKKRTIYRFSAKRALFILGPFNSIR
SLAIRISVHSLFSMFIICTVIINCVFMASARGDSSNVNIESAEYVFMGIYIFEALIKILA
RGFILDEFSFLRDPWNWLDSIVIATAFISYLPNIKVSVSSLRTFRVFRALKAISVVSGLK
VIVGALLRSVKKLVDVMILTLFCLSIFALVGQQLFMGNLNRKCVRKGMKDCDSNSKEYCF
EKKDSTEFRMCGLWMGNGTCSEQFECRHTTTNPDYNYTNFDNFGWSFLAMFRLMTQDSWE
KLYQQTLRTSGLYSVFFFVVVIFLGSFYLVNLTLAVVTMAYEEQNKNVAAETEAKERMFQ
EAQQLLKEEKEALVAMGIDRSSLNSLEASSFSPKKRKLFGNKRRKSFFLRESGKDQFSGS
DSDEDSSKKSHLLEQTKRLSQNLSVDYSEEHGDLFQRQRALSAVSILTITMHEQEKSQEP
CLSCGENLASKYLVWDCSPRWLCIKKALSTVMTDPFTELAITICIIINTVFLAMEHYKMD
PGFEKMLSMGNLVFTGIFMAEMCLKIIALDPYHYFRRGWNIFDSIVALLSFIDAMLASTA
ARKRSWMLFLRSLRVLRVFKLAKSWPTLNTLIKIIGHSVGALGNLTVVLGIVVFIFSVVG
MQLFGSQFSYKKSNSEEPRRWHMGDFYHSFLVVFRILCGEWIENMWECMQEADRYLCVIV
FLLIMVMGKLVVLNLFIALLLNSFSNEERDGHLEGEARKTKVQLALDRFRQAFCFVIHTL
EHFCRKQCRRQHLPKQKEVTGGLAAENKDVIPLVTEIKKGPETQEEFGILTYAPKTLSIG
HDRTWLAPLAEEEDNAESPDEDKTQCVTQPEAGRQAYELHQKNKESTSPGAQSVEIDVFS
EDDPYLSIQNPRKKSDDTSVLSECSTIDPQDPFRQISNMVSKKEPERCLPKGLNCCFPRC
AMDKRKSPWIIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALVFEDIHLNRKPQIEALL
HCTDNIFTYIFILEMGLKWVAFGFGKYFTSAWCWLDFIIVIVSVTSLIDLKGLKSFRTLR
ALRPLRALSQFEGMKVVVNALVGAIPAILNVLLVCLIFWLIFCILGVNLFSGKFGRCVNV
TGANSVIDYKIVANRSQCEEKYHYWSTPQVNFDNVGMAYLALLQVATFKGWMEIMYAAVD
SREEGQQPAFEVNLYMYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKLGGQDIFMTEE
QKKYYNAMKKLGSKKPQRPIPRPLNKCQGLVFDLVTSQVFDIIIIILILLNMISMMAESY
GQPDHKKLILEHLNLAFVVIFTIECLIKIFALRQYYFANGWNLFDCVIVILSIVSTMISA
LENQEHIPFPPTLFRIIRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVM
FIYAIFGMNCFYKVKPGSGIDDIFNFQTFVGSMLCLFQITTSAGWDALLNPMLQSEDLCN
PKSENCHLSTIAIAYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLGEDDFEMFYE
VWEKFDPEATQFIRYSSLSDFADALPEPLRVAKPNRYQFLVMDLPMVSGDRLHCLDILFA
FTTRVLGESSGLDSMKAVMEEKFMEANPFKKLYEPIVTTTKRKEEERCAAVIQKAFRKYK
MTKCALEDRPHSPLQVLCNGDLSSSGATEGKVHYD
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaatacatgttttctggctccgtgatcaatccattttctggtggaagtgatggt
gatctgatcctgtgggttgggaattcaggcagggcaacaatgaggatggcttgtctgctt
catgatgtctggggcctcagctggaaggacatgtattccctgcttgacagggttcactcg
acagctggaggctggaatcttctggtctttgcatttttgagctttggagccgcccctcct
agaagggcttcaactgccaggagcaggagctctgactccgtgagggacttgctctgcgga
gagtttcacgaggtacacacagggctgctgcctggagccatcttaccagaaggcagggag
aagatggacgagaggtgctacccagtgatcttcccagatgcacggaatttccgccccttc
actcctgactctctggctgcaattgagaagcagatggccatccaaaaggaggaaaagaag
tccaaagaccagaaatcagcagaaccccagcttcgacctcagcttgacctaaaggtctcc
agaaatttgcccaagctctatggagatattccccctgagctgatagcaaaacccctggaa
gatctggacccattctacagaaatcataagacatttatggtgttgaacaaaaagagaaca
atctaccgctttagtgccaaacgagccttgttcattttgggacctttcaattcaatcaga
agtttagccattagaatctcagtccattcattgttcagcatgttcatcatctgcaccgtc
atcatcaactgcgtgtttatggcctcagctcgcggggacagcagcaatgtaaatattgaa
agcgctgagtatgtcttcatggggatttatatatttgaagcattaattaaaatattggca
agaggttttattctggatgagttttctttccttcgagatccatggaactggctggactcc
attgtcattgcaacagcgtttatatcatatttgccaaatatcaaggtcagtgtgtcatcc
ctgcgtaccttccgagtattcagagctttgaaagcaatttcagtagtttcaggtctgaag
gtcattgttggggccttgctgcgctctgtgaagaaacttgtcgatgtgatgatcctgact
ctcttttgcctcagcatcttcgccctggtaggtcagcagctcttcatgggaaatctgaac
cggaaatgtgtcaggaaaggcatgaaggactgtgactctaacagtaaagaatattgcttt
gaaaagaaagattccactgaattcagaatgtgtggtctctggatgggtaacggaacttgt
tctgaacaatttgaatgcaggcacaccacgacaaatcctgactataattacacgaatttt
gacaactttggctggtcttttcttgccatgttccggcttatgacccaagattcctgggag
aagctttatcaacagaccttgcgtacctcagggctctactcagtcttcttctttgtggtg
gtcatcttcctgggctctttctacctggttaacttaaccctggctgttgtcaccatggct
tacgaggaacagaacaagaacgtagctgctgagacggaagccaaggagaggatgttccag
gaagctcagcagctgttaaaggaggagaaggaggctctggttgccatgggaattgacaga
agttcacttaattcccttgaagcgtcatctttttccccaaagaagagaaagctatttggt
aataagagaagaaaatccttctttttgagagagtctgggaaagaccagttttcaggatca
gattctgatgaagattcttcaaaaaagtcacacctcctagagcaaaccaaacgactgtcc
cagaatctgtcagtggactacagtgaagagcacggagacctcttccaaaggcagagagct
ctgagtgccgtcagcatcctcactatcaccatgcacgaacaagaaaaatcacaggaacct
tgcctctcatgtggagaaaacctggcatccaaatacctcgtgtgggactgtagcccccgg
tggctgtgcattaagaaggccctgagcactgtgatgaccgacccctttactgagctggcc
atcaccatctgcatcataatcaacactgtcttcttggccatggaacattacaaaatggac
ccgggttttgagaaaatgttgtccatggggaatttggtttttactggcattttcatggct
gaaatgtgcctaaaaatcattgcactagatccctaccattactttcgccgaggctggaac
atttttgatagcattgttgctcttctgagttttatagacgcgatgttagctagtacagct
gcaaggaagcgaagttggatgttattccttcgttccttaagagtgctgagggtcttcaag
ttagccaaatcctggccaactttaaacacactgattaagataattggccattctgttggg
gcccttggaaacctgactgtggtcttgggcattgtggtcttcattttctcagtagttggc
atgcagctttttggctctcaattcagttataaaaagagtaattcggaagaaccccgacgc
tggcacatgggggatttctaccactcctttctggtggtattccgcatcctgtgtggggaa
tggattgaaaacatgtgggaatgtatgcaagaagctgatcgatacctgtgcgttattgtc
tttctgctgattatggtgatgggaaaactcgtggtactcaacctcttcattgccttgctg
ctaaattccttcagcaatgaggagagagatggccacttggaaggagaggccaggaaaacc
aaagtacagttagccctggatagattccgccaggctttttgttttgtgatacatactctt
gagcatttttgtcgcaagcagtgcaggaggcagcatttaccaaagcaaaaagaagtgaca
ggaggccttgctgcagagaacaaagacgtcattcccctggtcacagagattaaaaagggc
ccagagactcaggaggagtttgggatactgacttatgcaccaaagaccttgagtatcgga
catgatcggacttggttggccccacttgcagaggaagaagataatgctgaatctcctgat
gaagataagacacagtgtgtcacacaacctgaggctggaagacaggcttatgaactacat
cagaagaacaaggagtccaccagtccaggagctcaaagtgtagaaattgatgtattctct
gaagatgatccttatctgtcaatacagaatccccgaaagaagtctgatgataccagtgtc
ctctcagaatgtagcaccattgatccacaggatcctttcaggcagatatctaacatggtt
tccaagaaggaaccagagagatgtttgcccaaaggcctgaattgctgctttccacgctgt
gctatggacaagagaaagtccccttggatcatttggtggaacctgcggaaaacctgctac
caaatagtgaaacacagctggtttgagagctttattatctttgtgattctgctgagcagt
ggggcactggtatttgaagatattcaccttaatagaaaacctcaaatcgaagcattgctt
cattgtactgacaatattttcacatacatttttatcttggagatgggtctgaaatgggtg
gcctttggatttgggaaatacttcaccagtgcctggtgctggctcgatttcatcattgtg
attgtctctgtgaccagtctcattgatttaaagggcttgaagtccttccggactctacga
gccctgaggcccctgcgagcactgtcccagtttgaaggaatgaaggtggtcgttaatgct
ctagtaggtgccatacctgccattctgaacgttttgcttgtctgtctcattttctggctc
atattttgtatcctgggagtaaatttgttttctggaaaatttggaagatgtgttaatgta
accggcgcaaactcagttatagattacaaaattgttgcaaaccgaagtcaatgtgaagaa
aagtaccactactggagcaccccgcaagtcaactttgacaatgtgggaatggcttacctc
gccctgctgcaagtggcaacatttaagggctggatggaaattatgtatgcagctgttgat
tccagagaggaaggacagcagccagcgtttgaggtgaacctatatatgtacctttacttc
gtagtttttatcatctttggctcattcttcactctgaatctctttattggtgttattatt
gacaacttcaaccagcagcagaaaaagttaggtggccaagacatttttatgacagaagag
cagaagaaatactataatgcaatgaaaaaactaggatccaaaaaacctcaaaggcccatt
ccaaggcctctgaacaaatgccagggtcttgtgtttgacctggtcacgagccaggtcttt
gacatcatcatcatcatcctcattctcctcaacatgattagcatgatggctgaatcatat
ggccagcccgatcacaagaaactcatccttgagcatctcaacctggcctttgtggtcatc
tttacaattgagtgtctcatcaaaatcttcgctttgagacagtactacttcgccaatggc
tggaatttatttgattgtgtgatcgtgatcctttctattgttagtacaatgatttccgcc
ttggagaaccaggagcacattcctttccctccaacactcttcagaattatccgcttggcc
cggattggccgaatcctgagactcgttcgggcagcacgaggaatcagaactctccttttt
gctctgatgatgtcccttccctctctattcaatatcggtcttctactctttctggttatg
tttatttatgccatttttggtatgaactgtttttacaaagtaaagccagggtctggaatt
gatgacatattcaactttcagacttttgtaggcagcatgctctgcctctttcagataacc
acatcagcaggctgggatgccctcctcaaccccatgttgcaatcagaagacttatgtaac
cctaagtcagaaaactgtcacttatctaccatagccatagcctacttcgttagttacatc
atcatctcctttctcatcgttgtcaacatgtatattgctgtgattctagagaatttcaat
acagccactgaagaaagtgaggacccattgggggaagatgactttgaaatgttctacgaa
gtctgggaaaagtttgacccagaagcaacacagtttatcagatattcttccctttctgac
tttgctgatgcccttcctgagcctttgcgtgtggcaaagccaaataggtaccaattttta
gtaatggacttgcccatggtgagcggagatcgcctccattgcctggatattctctttgct
ttcaccactagggtacttggagagtccagtggcctggatagcatgaaagcagtgatggag
gagaagttcatggaagccaaccctttcaagaagttatatgaacccatagtcactaccacc
aaaaggaaggaagaagaacgatgtgctgctgttattcagaaggcctttcgaaagtacaag
atgaccaagtgtgccttggaagacaggcctcattcacctctccaggtgctctgcaacggg
gacttgtccagctctggggccaccgagggcaaggtccactatgactga
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