Vicugna pacos (alpaca): 102540548
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Entry
102540548 CDS
T08098
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc04820
Cytoskeleton in muscle cells
vpc04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102540548
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102540548
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
vpc00536
]
102540548
Glycosaminoglycan binding proteins [BR:
vpc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102540548
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
102540548
NCBI-ProteinID:
XP_031530725
LinkDB
All DBs
Position
Unknown
AA seq
1258 aa
AA seq
DB search
MTVCPALFQGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGLPGDD
GERGDDGEAGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPP
GQQGNPGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGSQGPP
GPQGPIGYPGPRGVKGADGIRGLKGTKGEKQPCTPRPGVRPDSQAVGSVPRGGDWGGPPS
PSLSDLQGEIGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGP
KGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGP
AGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGP
QGPTGETGPMGERGHPGXPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGD
RGLPGPVGALGLKGSEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGA
PGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGP
TGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGE
TGDVGQMGPPGPPGPRGPSGSPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGP
PGPKGERGEKGESGPSGAAGPPDPRALPETTVPKAAPAQLVFLEIPVPPESLALRVKTVP
QVTKETTGNPGKRDPRAPLVSQAHLGHQEKGVPPAPRAPKAGRERKEPREKLAWKVLLGR
LAPLVPRGPPGSPGLTVCVGSPGLWVNKASPEPQAPTAPPGPMGPPGLPGLKGDSGPKGE
KGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGP
KGAKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQPLPIQASRTRRHIDASQLMDDGEGVES
YMDYADGMEEVFGSLNSLKLEIEQMKRPLGTQQNPARTCKDLQLCHPDFPDGEYWVDPNQ
GCSRDSFKVYCNFTGGGATCIFPDKKSEGARITSWPKENPGSWFSEFKRGKLLSYVDAEG
NPVGVVQMTFLRLLSASAHQNITYHCYQSVAWQDAATGSYDKAMRLLGSNDEEMSYDNSP
YVRALVDGCATKKGYQKTVLEIDTPKVEQVPIVDIMFNDFGDASQKFGFEVGPACFLG
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtttgccctgctctgtttcagggccgagctggcagcgacggagcaagagggatg
cccgggcagacgggccccaagggtgaccgtggcttcgacggcctggctggactgcccggg
gagaagggccaccggggtgaccccggtccttctggcccgccgggacttccaggagacgac
ggagaaaggggtgacgacggagaagccgggccccgagggctgcctggggagcccgggccg
cgtggtctgctggggccgaaggggccccccggccctcctggacctcctggtgtgacaggg
atggacggccagccaggcccgaaaggcaacgtgggtccccagggggagcccgggccccca
ggacagcagggtaatccgggtgcccagggtcttccaggcccccagggtgcaatcggtcct
cccggagaaaagggtcccctgggtaagccaggtctcccaggaatgcccggtgctgacgga
cccccggggcaccctggcaaagaaggccctccaggagagaagggaagccagggtcctccc
ggcccccaaggcccgatcggctaccctggtccccgtggagtcaagggggcagatggcatc
cgaggtctgaagggcaccaagggtgagaagcagccctgcacacccaggcctggggtccgg
cccgactcccaggcggtggggtcagtcccacggggtggagactgggggggtcccccctca
ccttctctttctgacctgcagggggagatcggcccacctggtcccagaggggaagacggc
cctgaaggccccaagggccgtggaggtccgaacggtgacccgggccctctggggcccccc
ggggagaagggaaaactcggcgtcccagggttaccgggttacccaggacgacaagggccg
aagggttccatcggctttcctggatttcctggcgccaatggagagaagggcggcaggggc
acacctgggaagccgggaccacggggacagcgaggcccaacgggcccacgaggggaaaga
ggcccccgcggcatcactgggaagcctggccccaagggcaactctggaggtgatggcccg
gccggccctccgggcgaacggggacccaacggaccccaaggacccacagggttccctgga
ccgaagggccccccgggccccccaggcaaggatgggctcccaggacaccctggacagagg
ggcgagacgggtttccaaggcaagaccggccctccaggccccccaggagtggtcggccct
cagggtcccacgggagaaactggtccgatgggtgagcgtggccaccccgggnccccgggc
ccccccggtgaacaggggctcccgggcctcgccggaaaagaggggacgaagggtgatcca
ggccccgccggccttcctgggaaagacggacccccagggttacgtggcttccctggggac
cgagggcttcctggcccagtgggggcgctgggactgaaaggcagcgagggcccccctggt
ccgccaggccccgcgggatctccgggggagagaggtccagcgggtgctgctgggcccatc
ggaattccagggagacctgggccccaggggcctccagggccagctggggagaaaggagct
cctggtgagaaaggtccgcaaggcccggccggccgagacggtctgcagggtcccgtgggg
ctccccggcccagccggccccgttggcccccctggagaagacggagacaagggagagatc
ggggagccgggacagaaggggagcaagggggacaaaggcgaacagggtccccctgggcct
acgggacctcaaggccccatcggacagccaggcccctccggagctgacggcgagccaggt
cctcgcggccagcagggcctttttgggcagaaaggtgacgaaggtccgagaggttttcct
gggccccccggacccgtggggctgcagggcctgccgggacccccaggagagaagggcgag
acgggagatgtgggccagatgggcccgccaggtccccccggcccccggggaccctccgga
tctccaggcgctgacgggccacaaggtccccccggtgggataggcaaccccggtgccgtg
ggagagaagggtgagcctggcgaggctggagaacctggccttcctggagaagggggcccc
ccgggacccaagggtgaaaggggagagaagggcgagtcgggcccttctggtgctgctggg
cccccggacccaagggccctcccggagacgacggtcccaaaggcagccccggcccagttg
gttttcctggagatcccggtccccccggagagcctggccctgcgggtcaagacggtcccc
caggtgacaaaggagacgacggggaacccgggcaaacgggatccccgggccccactggtg
agccaggcccatctgggccaccaggaaaaaggggtccccccggccccgcgggccccgaag
gccggcagggagagaaaggagccaagggagaagctggcttggaaggtcctcctgggaaga
ctggccccattggtccccagggggcccccgggaagcccgggcctgacggtctgcgtggga
tccccgggcctgtgggtgaacaaggcctccccggagccccaggccccgacggccccccct
ggccccatgggacccccaggactccccggcctcaaaggagattctggacccaaaggcgag
aagggtcatccaggcctgatcggactgattggacctccgggcgagcagggagaaaagggt
gaccgtgggctccccggccctcagggctcctctggcccgaagggagaacagggcatcact
ggtccctccggccccatcggccccccgggcccccctggcttgccgggccctcctggtcca
aaaggtgctaagggctcctcgggtccaactggcccaaagggtgaggcaggccacccagga
ccccccggcccgccgggccccccaggcgaggtcatccagcccctgccgatccaggcgtcc
aggacccggcggcacatcgacgccagccagctgatggacgacggggagggcgtggagagc
tacatggactacgcggacggcatggaggaggtgttcggctccctcaactccctgaagctg
gagatcgagcagatgaagcggcccctgggcacgcagcagaaccccgcgcgcacctgcaag
gacctgcagctctgtcaccccgacttcccagacggggagtactgggtggaccccaaccaa
ggctgctcccgggattctttcaaagtctactgcaacttcacaggcgggggtgccacgtgc
atcttccccgacaagaagtccgagggggccagaatcacttcttggcccaaagaaaaccca
ggttcctggttcagtgaattcaagcgtggcaaactgctctcctatgtggacgccgagggc
aaccccgtgggcgtggtccagatgactttcctgcggctgctgagtgcctccgcccaccag
aacatcacctaccactgctaccagtcggtggcctggcaggacgccgccacgggcagctac
gacaaggccatgcgcctcctgggctccaatgacgaggagatgtcctacgacaacagcccc
tacgtccgtgccctggtggacggctgcgctacaaagaaaggctatcagaagacggttctg
gagatcgacacccccaaggtggagcaagtgcccatcgtggacatcatgttcaatgacttt
ggtgacgcgtcacagaaatttggattcgaagtggggccggcttgcttcctgggctag
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