Vicugna pacos (alpaca): 102540593
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Entry
102540593 CDS
T08098
Symbol
PRPF38B
Name
(RefSeq) pre-mRNA-splicing factor 38B isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
vpc
Vicugna pacos (alpaca)
Pathway
vpc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vpc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102540593 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vpc03041
]
102540593 (PRPF38B)
Spliceosome [BR:
vpc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102540593 (PRPF38B)
Complex C
U4/U6.U5 tri-SnRNP related factors
102540593 (PRPF38B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
102540593
NCBI-ProteinID:
XP_006197445
UniProt:
A0A6I9HWD8
LinkDB
All DBs
Position
9
AA seq
546 aa
AA seq
DB search
MANNSPALTGNSQPQHQAAAAAAQQQQQQQCGGGGATKPAVSGKQGNVLPLWGNEKTMNL
NPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRG
VGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWF
ESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRPR
KIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELERE
KERQRLEREAKEREKERRRSRSIDRGLERRHSRSRERHRSRSRSRDRKGDRRDRDREREK
ENERGRRRDRDYDKERGNDREKERSRERSKERRSRGEIEEKKHKEDKDDRRHRDDKKDSK
KEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSREKLSKHRNESKEKSNKRSRSGSQGRTD
SVEKSRKREHSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRRRSQSIEPESQEKQHK
NKEETV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaacagccccgcgctgacaggcaactcgcagccgcagcaccaggcggccgca
gccgcggcccagcagcagcagcagcagcagtgcggcggcggtggcgccaccaagccggcc
gtctcgggcaagcagggcaatgtgctgccgttgtggggcaacgaaaagactatgaacctc
aaccccatgatcttgaccaatatcctgtcgtcgccttacttcaaagtgcagctctacgag
ctcaagacctaccacgaggtggtggacgagatctactttaaggtcacgcacgttgaacca
tgggagaaaggaagcaggaaaacagctggccaaacagggatgtgcggaggggttcgaggc
gttggaacaggaggaattgtttctacagctttttgtctgttatacaaattatttactcta
aagttaactcgtaagcaagtgatgggtctcataacacacacagattctccatatattaga
gcccttggatttatgtatataaggtacacacagccccctacagatctatgggactggttt
gaatccttccttgatgatgaagaggacctagatgtgaaggctggtggaggctgtgtaatg
accattggagaaatgctacggtcttttctcacaaaactggagtggttttctactttgttt
ccaagaattccagttccggttcagaagaatatcgatcaacagattaaaacccggccaagg
aaaatcaagaaagatgggaaggaaggtgctgaggaaatagacagacatgttgaacgcaga
cgttcaaggtctccaaggagatcactgagtccacggaggtccccaagaagatccagaagt
agaagccatcatcgggagggccatgggtcttctagttttgaccgagaattagaaagagag
aaagaacgccagcgactagagcgtgaagccaaagaaagggagaaagaaaggcgaagatcc
cgcagtatcgatcgggggctggaacgcagacatagcaggagtagggaaagacatagaagc
cgtagtcgaagtcgtgataggaaaggggatagaagggacagggatcgggaaagagagaaa
gaaaatgagagaggtaggaggcgagaccgtgactatgataaggaaagaggtaatgaccga
gaaaaggagcggtcaagagaacggtccaaggaacggagaagtaggggtgagatagaagaa
aagaaacataaagaagacaaagatgataggcggcacagagatgacaaaaaagattccaag
aaagagaaaaagcacagtagaagtagaagcagagaaagaaaacatagaagtaggagtaga
agtagaaatgctgggaaacgaagcagaagcaggagcagagagaaattaagtaaacataga
aatgaaagtaaagaaaaatcaaataaacggagtagaagtggcagtcaaggaagaactgac
agtgttgaaaaatcaagaaaacgagaacatagccccagcaaagaaaaatctaggaagcgt
agcagaagcaaagaacgttcccacaaacgagatcacagtgatagtaaggaccagtctgac
aaacatgaccgtcgaaggagccaaagtatagaaccagagagccaagaaaagcaacataaa
aacaaagaggagactgtgtga
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